Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0550
(479 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g04400.1 68416.m00466 60S ribosomal protein L23 (RPL23C) simi... 239 9e-64
At2g33370.1 68415.m04090 60S ribosomal protein L23 (RPL23B) 239 9e-64
At1g04480.1 68414.m00439 60S ribosomal protein L23 (RPL23A) iden... 239 9e-64
At5g46160.2 68418.m05678 ribosomal protein L14 family protein / ... 53 9e-08
At5g46160.1 68418.m05677 ribosomal protein L14 family protein / ... 53 9e-08
At1g17560.1 68414.m02163 ribosomal protein L14 family protein si... 49 2e-06
At1g48700.1 68414.m05450 oxidoreductase, 2OG-Fe(II) oxygenase-re... 29 1.2
At5g61780.1 68418.m07753 tudor domain-containing protein / nucle... 29 1.6
At1g79110.2 68414.m09225 expressed protein 29 1.6
At1g79110.1 68414.m09224 expressed protein 29 1.6
At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein ... 28 2.8
At4g24890.1 68417.m03562 calcineurin-like phosphoesterase family... 27 6.5
At3g10880.1 68416.m01310 hypothetical protein 27 6.5
At2g45570.1 68415.m05667 cytochrome P450 76C2, putative (CYP76C2... 27 6.5
At4g23150.1 68417.m03341 protein kinase family protein contains ... 27 8.7
>At3g04400.1 68416.m00466 60S ribosomal protein L23 (RPL23C) similar
to ribosomal protein L17 GB:AAA34113.1 from [Nicotiana
tabacum]
Length = 140
Score = 239 bits (584), Expect = 9e-64
Identities = 106/131 (80%), Positives = 124/131 (94%)
Frame = +1
Query: 52 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDM 231
MSKRGRGG++G KFR+SLGLPV A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A GDM
Sbjct: 1 MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
Query: 232 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP 411
++ATVKKGKP+LRKKV+PAV++RQRKP+RR+DGVF+YFEDNAGVIVN KGEMKGSAITGP
Sbjct: 61 VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
Query: 412 VAKECADLWPR 444
+ KECADLWPR
Sbjct: 121 IGKECADLWPR 131
>At2g33370.1 68415.m04090 60S ribosomal protein L23 (RPL23B)
Length = 140
Score = 239 bits (584), Expect = 9e-64
Identities = 106/131 (80%), Positives = 124/131 (94%)
Frame = +1
Query: 52 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDM 231
MSKRGRGG++G KFR+SLGLPV A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A GDM
Sbjct: 1 MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
Query: 232 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP 411
++ATVKKGKP+LRKKV+PAV++RQRKP+RR+DGVF+YFEDNAGVIVN KGEMKGSAITGP
Sbjct: 61 VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
Query: 412 VAKECADLWPR 444
+ KECADLWPR
Sbjct: 121 IGKECADLWPR 131
>At1g04480.1 68414.m00439 60S ribosomal protein L23 (RPL23A)
identical to GB:AAB80655
Length = 140
Score = 239 bits (584), Expect = 9e-64
Identities = 106/131 (80%), Positives = 124/131 (94%)
Frame = +1
Query: 52 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDM 231
MSKRGRGG++G KFR+SLGLPV A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A GDM
Sbjct: 1 MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
Query: 232 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP 411
++ATVKKGKP+LRKKV+PAV++RQRKP+RR+DGVF+YFEDNAGVIVN KGEMKGSAITGP
Sbjct: 61 VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
Query: 412 VAKECADLWPR 444
+ KECADLWPR
Sbjct: 121 IGKECADLWPR 131
>At5g46160.2 68418.m05678 ribosomal protein L14 family protein /
huellenlos paralog (HLP) contains Pfam profile PF00238:
Ribosomal protein L14p/L23e; identical to cDNA
HUELLENLOS PARALOG (HLP) nuclear gene for mitochondrial
product GU:18140859
Length = 172
Score = 53.2 bits (122), Expect = 9e-08
Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 10/115 (8%)
Frame = +1
Query: 109 LPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKK---V 279
+ +G V+ DN+GAK V+ +Q +KG+ A GD IVA+VK+ P + K V
Sbjct: 47 IQMGTVLKVVDNSGAKK--VMCIQALKGK----KGARLGDTIVASVKEAMPNGKVKKGAV 100
Query: 280 MPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMK-------GSAITGPVAKE 423
+ VV+R R DG + F+DNA V+V++K + G+ + GPV E
Sbjct: 101 VYGVVVRAAMQRGRVDGSEVRFDDNAVVLVDSKDKNTKTDRQPIGTRVFGPVPHE 155
>At5g46160.1 68418.m05677 ribosomal protein L14 family protein /
huellenlos paralog (HLP) contains Pfam profile PF00238:
Ribosomal protein L14p/L23e; identical to cDNA
HUELLENLOS PARALOG (HLP) nuclear gene for mitochondrial
product GU:18140859
Length = 173
Score = 53.2 bits (122), Expect = 9e-08
Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 10/115 (8%)
Frame = +1
Query: 109 LPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKK---V 279
+ +G V+ DN+GAK V+ +Q +KG+ A GD IVA+VK+ P + K V
Sbjct: 48 IQMGTVLKVVDNSGAKK--VMCIQALKGK----KGARLGDTIVASVKEAMPNGKVKKGAV 101
Query: 280 MPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMK-------GSAITGPVAKE 423
+ VV+R R DG + F+DNA V+V++K + G+ + GPV E
Sbjct: 102 VYGVVVRAAMQRGRVDGSEVRFDDNAVVLVDSKDKNTKTDRQPIGTRVFGPVPHE 156
>At1g17560.1 68414.m02163 ribosomal protein L14 family protein
similar to GB:Z98756 from (Mycobacterium leprae)
Length = 196
Score = 48.8 bits (111), Expect = 2e-06
Identities = 38/110 (34%), Positives = 58/110 (52%), Gaps = 15/110 (13%)
Frame = +1
Query: 109 LPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKV--- 279
+ +G ++ C DN+ AK V+ +Q ++G+ A GD+IV +VK+ P ++KKV
Sbjct: 49 IQMGTILKCVDNSCAKE--VMCIQSLRGK----KGARLGDIIVGSVKEANPIVQKKVKKD 102
Query: 280 -MP-----------AVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKG 393
+P VV+R P R DG + F+DNA V+V K E KG
Sbjct: 103 AIPKGKVKKGMVVYGVVVRAAMPKGRADGSQVKFDDNAIVVVGIK-EKKG 151
>At1g48700.1 68414.m05450 oxidoreductase, 2OG-Fe(II)
oxygenase-related contains weak hit to Pfam PF03171:
oxidoreductase, 2OG-Fe(II) oxygenase family
Length = 286
Score = 29.5 bits (63), Expect = 1.2
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = -3
Query: 369 DYDTRIVLKVYKYSITPSE-RFPL--PDDHCRHYLFPEFRFTLFDCGHNHVPGTGRRQSV 199
D+ +++L+V + +E F + PD+ ++ FPE T+FD + G +
Sbjct: 91 DFSEKLLLEVENFRKWANETNFTIRRPDNTSKYVFFPEVCGTMFDSHYGFFIENGEDRDA 150
Query: 198 QATFDTLDSDHIQILC 151
F DSD +C
Sbjct: 151 DVGFHVEDSDITLNVC 166
>At5g61780.1 68418.m07753 tudor domain-containing protein / nuclease
family protein contains Pfam domains PF00567: Tudor
domain and PF00565: Staphylococcal nuclease homologue
Length = 985
Score = 29.1 bits (62), Expect = 1.6
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -3
Query: 285 RHYLFPEFRFTLFDCGHNHVPGTGRRQSVQ 196
R YL PEF+F P GRRQS Q
Sbjct: 204 RVYLLPEFQFVQVFVAGLQAPSMGRRQSTQ 233
>At1g79110.2 68414.m09225 expressed protein
Length = 355
Score = 29.1 bits (62), Expect = 1.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 96 TEFRSRGTTTSSLRHFVVSNPRADSC 19
T RSR ++ S+ H ++ NPR+ SC
Sbjct: 98 TRKRSRDSSRSNYHHLLLQNPRSSSC 123
>At1g79110.1 68414.m09224 expressed protein
Length = 358
Score = 29.1 bits (62), Expect = 1.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 96 TEFRSRGTTTSSLRHFVVSNPRADSC 19
T RSR ++ S+ H ++ NPR+ SC
Sbjct: 98 TRKRSRDSSRSNYHHLLLQNPRSSSC 123
>At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 675
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -3
Query: 357 RIVLKVYKYSITPSERFPLPDDHCRHYL 274
RI L V K + P P P +CRHYL
Sbjct: 333 RIALGVKKLKLKPVAPKPKPIKYCRHYL 360
>At4g24890.1 68417.m03562 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 calcineurin-like
phosphoesterase
Length = 615
Score = 27.1 bits (57), Expect = 6.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -2
Query: 241 WPQSCPRNRPPAVCSGDL*YLGQRSHTD 158
WP S + + P +CS + Y+ SH D
Sbjct: 96 WPTSGGKEKTPYICSSPIKYMYCNSHPD 123
>At3g10880.1 68416.m01310 hypothetical protein
Length = 278
Score = 27.1 bits (57), Expect = 6.5
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = -3
Query: 207 QSVQATFDTLDSDHIQILC--PC-VVGAVDYCSHWETQGDTEFRSRGTTTSSLRHFVVSN 37
QS+ T++ L+ + + L PC +V ++ S ++ + S GT+ SSL H VVS
Sbjct: 18 QSLGETYNDLNQELLNGLLKLPCSLVTSMGALSTFKPDKSPDLESGGTSYSSLNHQVVST 77
Query: 36 PRAD 25
++
Sbjct: 78 TSSE 81
>At2g45570.1 68415.m05667 cytochrome P450 76C2, putative (CYP76C2)
(YLS6) identical to SP|O64637 Cytochrome P450 76C2 (EC
1.14.-.-) {Arabidopsis thaliana}, cDNA YLS6 mRNA for
cytochrome P450 (CYP76C2), partial cds GI:13122289
Length = 512
Score = 27.1 bits (57), Expect = 6.5
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -1
Query: 164 YRFFAPVLSAQLITAPTGRPREIRNFAPAEPPRPLLDIL 48
+ F VLS +I T RPR R P+ P P L I+
Sbjct: 10 FPLFCFVLSFFIIFFTTTRPRSSRKVVPSPPGPPRLPII 48
>At4g23150.1 68417.m03341 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 659
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 135 AVDYCSHWETQGDTEFRSRGTTTSSLRH 52
AV S QGDTEF++ ++LRH
Sbjct: 362 AVKRLSKTSEQGDTEFKNEVVVVANLRH 389
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,543,292
Number of Sequences: 28952
Number of extensions: 256208
Number of successful extensions: 805
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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