Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0548
         (668 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    25   0.74 
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           23   3.0  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    22   4.0  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    22   4.0  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    21   6.9  

>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 24.6 bits (51), Expect = 0.74
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 234 NSSTPCSKALCCFSFATSSADGSTI 160
           N + PC  A+C       S DG+TI
Sbjct: 158 NRAPPCDPAVCVLPDCFCSEDGTTI 182


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +1

Query: 466 SH*AEAHGNVREEPAPHKGRH*AREISLNHYFITVTRKCISLVSPYFNIDVSQID 630
           +H  E + +V+EEP     R    +  LNH+  +VT     +V+  F   +SQ D
Sbjct: 40  THNNEMYHSVKEEPIYESCRFSINQPYLNHFDNSVT----PMVNHDFTQHLSQYD 90


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +1

Query: 466 SH*AEAHGNVREEPAPHKGRH*AREISLNHYFITVTRKCISLVSPYFNIDVSQID 630
           +H  E +  V+EEP     R    +  LNH+  +VT     +V+  F   +SQ D
Sbjct: 40  THNNEMYHRVKEEPIYESCRFSINQPYLNHFDNSVT----PMVNHDFTQHLSQYD 90


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +1

Query: 466 SH*AEAHGNVREEPAPHKGRH*AREISLNHYFITVTRKCISLVSPYFNIDVSQID 630
           +H  E +  V+EEP     R    +  LNH+  +VT     +V+  F   +SQ D
Sbjct: 40  THNNEMYHRVKEEPIYESCRFSINQPYLNHFDNSVT----PMVNHDFTQHLSQYD 90


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 601 YFNIDVSQIDLRRPLQVLF 657
           +F ID    + R+P+++LF
Sbjct: 301 FFEIDRINAESRKPIRILF 319


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,635
Number of Sequences: 336
Number of extensions: 3179
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)