Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0548
(668 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 31 0.11
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 30 0.26
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 29 0.61
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 29 0.61
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos... 28 1.1
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.4
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch... 27 2.4
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 27 3.2
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 27 3.2
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch... 27 3.2
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy... 26 4.3
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 26 4.3
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 26 5.6
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 26 5.6
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 25 7.5
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr... 25 7.5
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 25 7.5
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 25 9.9
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 31.5 bits (68), Expect = 0.11
Identities = 37/151 (24%), Positives = 63/151 (41%), Gaps = 3/151 (1%)
Frame = +2
Query: 98 LKSQLEGFNTSCLRDVDTNEKIVLPSAEDVAKEKQHNAL--LQGVELFQPSSLRKTETIE 271
L S++ N+ L+ D EK + +E E++ N+L Q +E SSL+ +T+E
Sbjct: 135 LNSEISNQNSLILQKKDELEKSIQRCSE---LEEKINSLESAQSIEQEVISSLKDDKTVE 191
Query: 272 -KNILPNAIDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLN 448
KN +P +T+ G+ S + K + + K IEA E +
Sbjct: 192 TKNDVPEVSRPSTDTI------GVSSALSKKKKKRNRKNQKKKSTKQNIEATTENDALSE 245
Query: 449 GIENFDPTKLKHTETCEKNPLPTKDVIEQEK 541
I D K+ +E + D E+E+
Sbjct: 246 SISTPDIQKVAQSEDVDAEQDTVADSKEEER 276
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 30.3 bits (65), Expect = 0.26
Identities = 16/55 (29%), Positives = 20/55 (36%)
Frame = +1
Query: 358 PAEAHRDSGEEPASGQRCYRSGEGKEQIPERHRELRSH*AEAHGNVREEPAPHKG 522
P H + GE + GE P +H EL H H E+ HKG
Sbjct: 313 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPFKHHELEEHEGPEHHRGPEDKEHHKG 367
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 29.1 bits (62), Expect = 0.61
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 206 NALLQGVELFQPSSLRKTETIEKNILPNAIDVATEKTQKSLFD 334
+ L EL Q +SLR + I N ++D+ + +K LFD
Sbjct: 1766 SGLADDSELVQTASLRAAKMIVNNYATKSVDLLLPELEKGLFD 1808
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 29.1 bits (62), Expect = 0.61
Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Frame = +2
Query: 257 TETIEKNILPNAI-DVATEKTQKSLFDGIEKFDSSQLK-HTETQEKNPLPDKDAIEAEKE 430
T IEK P + DV + +++ K +++K H E+ E P+ ++ + EKE
Sbjct: 763 TPEIEKQSTPEILKDVDVDFLKRNTSLSRRKSMPAEIKRHKESSETKPVDKEEVKKNEKE 822
Query: 431 KNKFL----NGIENFDPTKLKHTETCEKNPLPTKDVIEQEKSA 547
K+ + +E+ P H T +K+P+ + +++ A
Sbjct: 823 KDDPMRLAQQLLESLAPDFALHENTQQKSPVEKPKKLRKDRYA 865
>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 28.3 bits (60), Expect = 1.1
Identities = 19/84 (22%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Frame = +2
Query: 224 VELFQPSSLR-KTETIEKNILPNAIDVATEKTQKSLFDGIEKFDSSQLKHTETQEK-NPL 397
++ FQ + L + E ++K ++ + E ++ LF ++ +++ T+E NP+
Sbjct: 402 IQSFQNAILEGEREDVDKKVVEFLNPLVLELQERLLFVVQTAIETDIQRYSPTEEDLNPI 461
Query: 398 PDKDAIEAEKEKNKFLNGIENFDP 469
D ++ + EK + N E DP
Sbjct: 462 ADDKSLLFDLEKLRLNNDEEKLDP 485
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 27.1 bits (57), Expect = 2.4
Identities = 23/53 (43%), Positives = 27/53 (50%)
Frame = -3
Query: 231 SSTPCSKALCCFSFATSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRS 73
SS+ S L SF TS A S I SLVS+S +Q +S S ATL S
Sbjct: 58 SSSSSSSPLSSSSF-TSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSS 109
>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 392 PLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPL 511
P D D I+ +E F NG+ +FD +K+ T K+P+
Sbjct: 159 PTCDSD-IDLIREYFSFENGVCSFDNMTVKYVSTSSKSPV 197
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 26.6 bits (56), Expect = 3.2
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 416 EAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEKSA 547
E EKE K ENF+ + + E E+ L +EQEK+A
Sbjct: 445 EMEKELQKIR---ENFEEERRRAIEVAEQRQLIVNHELEQEKNA 485
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 26.6 bits (56), Expect = 3.2
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -3
Query: 195 SFATSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRSFRE 64
SF SSA S+ +SRR V+ S FR+VA + RE
Sbjct: 15 SFTNSSAQQLFSKSIAHSSRRNFVISSSCTKFRNVAIQRNAKRE 58
>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
T-protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 325
Score = 26.6 bits (56), Expect = 3.2
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +1
Query: 514 HKGRH*AREISLNHYFITVTRKCI-SLVSPYFNIDVSQ-IDLRRPLQVL 654
HKG + +E+++ Y+ VTRK I + P + + SQ I+ PL ++
Sbjct: 215 HKGCYLGQELTVRTYYTGVTRKRIFPFIIPNYEDNPSQVIEPSAPLSIV 263
>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 274
Score = 26.2 bits (55), Expect = 4.3
Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%)
Frame = +2
Query: 83 KVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVAKEKQHNALLQGVELFQPSSLRKTE 262
K D+K+ L+GFN L D EKI+ + E+ + + +S K
Sbjct: 82 KFEGDIKNCLDGFNE--LNDPIVQEKILRAFEQGHVDEEDEERCRK---MASDASEEKDR 136
Query: 263 TIEKNILPNAIDVAT-EKTQKS-LFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKE 430
IE+ L + + + +KS +EK KH ++++P P + +E ++E
Sbjct: 137 KIEEGELTSEEEKEPIQDLRKSHKRKSVEKSSVPNKKHKAERKRSPSPKIEILEDDEE 194
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 26.2 bits (55), Expect = 4.3
Identities = 22/85 (25%), Positives = 38/85 (44%)
Frame = +2
Query: 11 SSSKIY*FTMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVA 190
S SK+ +A S + ++ D P+ +T S L+ F+T + + + VLPS D
Sbjct: 26 SPSKVCRDNIALSEHNVITVLDTPQRSTQCDSLLKSFSTPLV----SGSEDVLPSPRDAL 81
Query: 191 KEKQHNALLQGVELFQPSSLRKTET 265
++ + L SS + T T
Sbjct: 82 NITNKKSVTDNLLLSLTSSNQSTNT 106
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 25.8 bits (54), Expect = 5.6
Identities = 16/67 (23%), Positives = 28/67 (41%)
Frame = +2
Query: 341 EKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTK 520
+ FD +K +EK L + AE EK++ N +E+ + + N K
Sbjct: 74 KSFDEELVKFHNLEEKLQLTETKCRNAESEKSRVENELEDLTSSLFEEANRMVAN--ARK 131
Query: 521 DVIEQEK 541
+ + EK
Sbjct: 132 ETVASEK 138
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 25.8 bits (54), Expect = 5.6
Identities = 22/127 (17%), Positives = 51/127 (40%), Gaps = 2/127 (1%)
Frame = +2
Query: 149 TNEKIVLPSAEDVAKEKQHNALLQGVELFQPSSLRKTETIEKNILPNAIDVATEKTQKSL 328
T E+ + E++ + Q L +E + ++ E +++ ++ + + L
Sbjct: 869 TTERAIALDKEEILRRTQER--LANIEDSFSETKQQNENLQRESA--SLKQINNELESEL 924
Query: 329 FDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCE--K 502
+ K ++ + E +EK L +KD ++ + E K + E C+ +
Sbjct: 925 LEKTSKVETLLSEQNELKEKLSLEEKDLLDTKGELESLRENNATVLSEKAEFNEQCKSLQ 984
Query: 503 NPLPTKD 523
+ TKD
Sbjct: 985 ETIVTKD 991
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.4 bits (53), Expect = 7.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 425 KEKNKFLNGIENFDPTKLKHTETCEKN 505
K + K L G ++ DP L+ + CE+N
Sbjct: 307 KMQEKELEGSDSIDPILLEKIDVCEEN 333
>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
aminotransferase Eca39|Schizosaccharomyces pombe|chr
2|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 317 QKSLFDGIEKFDSSQLKHTETQEKNPLPD 403
Q + G + DSS +K T +E PLP+
Sbjct: 3 QTAALHGPKPMDSSHIKVTNVKELKPLPE 31
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 25.4 bits (53), Expect = 7.5
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 281 LPNAIDV-ATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPD 403
+PN + + +T QKSL D E D++ LK + + LPD
Sbjct: 75 VPNYLIIGSTLDLQKSLIDADENVDANVLKDSASIRHVSLPD 116
>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 25.0 bits (52), Expect = 9.9
Identities = 21/71 (29%), Positives = 37/71 (52%)
Frame = +2
Query: 62 PSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVAKEKQHNALLQGVELFQP 241
P K L K+ +L+S L+ SCL+D T+ K ++ +E ++ + L + + F
Sbjct: 14 PGNKCLAKL-NELESILKDAKKSCLKDPTTSMKELVACSEKT--QQVFDDLKRTEKKFHT 70
Query: 242 SSLRKTETIEK 274
S R +T+EK
Sbjct: 71 SLNRFGKTLEK 81
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,646,716
Number of Sequences: 5004
Number of extensions: 55023
Number of successful extensions: 216
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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