Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0548
(668 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46525| Best HMM Match : Thymosin (HMM E-Value=0) 117 1e-26
SB_52732| Best HMM Match : M (HMM E-Value=0.019) 34 0.12
SB_25624| Best HMM Match : PHD (HMM E-Value=1.3e-17) 33 0.21
SB_11031| Best HMM Match : VPS9 (HMM E-Value=8.3e-21) 33 0.21
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 32 0.37
SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0) 32 0.37
SB_19898| Best HMM Match : Merozoite_SPAM (HMM E-Value=3.7) 31 0.85
SB_18643| Best HMM Match : Ion_trans (HMM E-Value=0) 31 0.85
SB_39938| Best HMM Match : ANF_receptor (HMM E-Value=6.4e-14) 30 1.5
SB_16625| Best HMM Match : Death (HMM E-Value=1.5) 30 1.5
SB_8597| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9) 30 2.0
SB_14080| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_7844| Best HMM Match : RasGEF (HMM E-Value=0.00058) 29 2.6
SB_6454| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_48586| Best HMM Match : DUF285 (HMM E-Value=1.7) 29 3.4
SB_29288| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91) 29 4.5
SB_32651| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0) 29 4.5
SB_34166| Best HMM Match : RVT_1 (HMM E-Value=1e-23) 28 6.0
SB_39577| Best HMM Match : DUF1213 (HMM E-Value=0.54) 28 6.0
SB_59536| Best HMM Match : Tetraspannin (HMM E-Value=1.3) 28 7.9
SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_26233| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_25209| Best HMM Match : Astacin (HMM E-Value=7.69999e-41) 28 7.9
SB_13773| Best HMM Match : TolA (HMM E-Value=0.042) 28 7.9
SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26) 28 7.9
SB_27965| Best HMM Match : Sec61_beta (HMM E-Value=0.84) 28 7.9
SB_15442| Best HMM Match : rve (HMM E-Value=0.00084) 28 7.9
SB_10018| Best HMM Match : Sas10_Utp3 (HMM E-Value=7.6e-35) 28 7.9
>SB_46525| Best HMM Match : Thymosin (HMM E-Value=0)
Length = 750
Score = 117 bits (281), Expect = 1e-26
Identities = 64/148 (43%), Positives = 95/148 (64%), Gaps = 2/148 (1%)
Frame = +2
Query: 101 KSQLEGFNTSCLRDVDTNEKIVLPSAEDVAKEKQHNALLQGVELFQPSSLRKTETIEKNI 280
+++++ F S L+ V+T EK LP+ + +A EK+ A GVE+FQ + L+ ET+EKN
Sbjct: 451 RAEVKSFEKSKLQHVETKEKNTLPTKDTIADEKR-TAPFSGVEVFQKNKLKHVETLEKNP 509
Query: 281 LPNAIDVATEKTQKSLFDGIE--KFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGI 454
LP+A ++ E + L D E KFD+S+LKH ET+EK +P KD IEAE ++ +
Sbjct: 510 LPDAQNIRAEMMPEVLPDRSEVAKFDTSKLKHVETKEKVVMPTKDVIEAEAIDSRA--EV 567
Query: 455 ENFDPTKLKHTETCEKNPLPTKDVIEQE 538
++FD +KLKH T EKNPLPT + +E
Sbjct: 568 KSFDHSKLKHVVTQEKNPLPTPQTLHEE 595
Score = 113 bits (271), Expect = 2e-25
Identities = 66/159 (41%), Positives = 97/159 (61%), Gaps = 2/159 (1%)
Frame = +2
Query: 77 LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVAKEKQHNALLQGVELFQPSSLRK 256
+PK D +S++ F+ + L+ V T EK ++PS ED+ KE+ ++ + V+ F S L+
Sbjct: 597 IPKNKPD-RSEVASFDHTKLKHVTTQEKSIMPSQEDI-KEEAVDSRAE-VKSFDHSKLKH 653
Query: 257 TETIEKNILPNAIDVATEKTQKSLFD--GIEKFDSSQLKHTETQEKNPLPDKDAIEAEKE 430
ET+EKN LP+A + E + L D + FD+S+LKH E QEKNPLP KD I E
Sbjct: 654 VETVEKNPLPSAAVLKEEMRPEVLPDVSAVASFDASKLKHVEVQEKNPLPTKDDITTEST 713
Query: 431 KNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEKSA 547
+ + ++ FD +KLKH +T EKNPLP I QEK++
Sbjct: 714 ETR--AEVKTFDHSKLKHVQTEEKNPLPDAKTIAQEKAS 750
Score = 108 bits (260), Expect = 3e-24
Identities = 65/149 (43%), Positives = 86/149 (57%), Gaps = 4/149 (2%)
Frame = +2
Query: 104 SQLEGFNTSCLRDVDTNEKIVLPSAEDVAKEKQHNALLQGVEL--FQPSSLRKTETIEKN 277
S++ F+ + L+ V T EK LPS E + +E Q + E+ F+ S L+ ET EKN
Sbjct: 412 SEVAKFDAANLKHVQTKEKNTLPSDETIKQELQPDEFPDRAEVKSFEKSKLQHVETKEKN 471
Query: 278 ILPNAIDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAE--KEKNKFLNG 451
LP +A EK + + F G+E F ++LKH ET EKNPLPD I AE E +
Sbjct: 472 TLPTKDTIADEK-RTAPFSGVEVFQKNKLKHVETLEKNPLPDAQNIRAEMMPEVLPDRSE 530
Query: 452 IENFDPTKLKHTETCEKNPLPTKDVIEQE 538
+ FD +KLKH ET EK +PTKDVIE E
Sbjct: 531 VAKFDTSKLKHVETKEKVVMPTKDVIEAE 559
Score = 70.5 bits (165), Expect = 1e-12
Identities = 33/70 (47%), Positives = 48/70 (68%), Gaps = 2/70 (2%)
Frame = +2
Query: 338 IEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIE--NFDPTKLKHTETCEKNPL 511
+ KFD++ LKH +T+EKN LP + I+ E + ++F + E +F+ +KL+H ET EKN L
Sbjct: 414 VAKFDAANLKHVQTKEKNTLPSDETIKQELQPDEFPDRAEVKSFEKSKLQHVETKEKNTL 473
Query: 512 PTKDVIEQEK 541
PTKD I EK
Sbjct: 474 PTKDTIADEK 483
>SB_52732| Best HMM Match : M (HMM E-Value=0.019)
Length = 1366
Score = 33.9 bits (74), Expect = 0.12
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = +2
Query: 68 LKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVAKEKQHNALLQGVELFQPSS 247
L DL +V +LKS+ EG CL D++ + DV +K+H L V + +
Sbjct: 1125 LMDLSRVGEELKSENEGLQQKCL-DLEKQRDTIKQDLADV--QKEHENLKSAVSISEGEL 1181
Query: 248 LRKTETIE 271
L+ T++
Sbjct: 1182 LKFKNTLQ 1189
>SB_25624| Best HMM Match : PHD (HMM E-Value=1.3e-17)
Length = 1828
Score = 33.1 bits (72), Expect = 0.21
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Frame = +2
Query: 83 KVATDLKSQLEGFNT-SCLRDV-DTNEKIVLP--SAEDVAKEKQHNALLQGVELFQPSSL 250
K+ L +E FN S R V D KI P SAEDV+ + + L ++L P L
Sbjct: 1275 KLKEKLDDNIESFNEYSQSRTVGDATNKITTPSVSAEDVS--EFYKKLNHNLDLKYPELL 1332
Query: 251 RKTETIEKNILPNAIDVATEKTQ 319
RK I+ NI ID+ + T+
Sbjct: 1333 RKCLEIKINISDEEIDIVEQDTR 1355
>SB_11031| Best HMM Match : VPS9 (HMM E-Value=8.3e-21)
Length = 900
Score = 33.1 bits (72), Expect = 0.21
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +2
Query: 278 ILPNAIDVATEKTQKSLFDG-IEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGI 454
I P + A EKT K + DG +EK+ + +T + L D D E+E + L+
Sbjct: 349 IPPAQVQAAEEKTPKDIIDGLLEKYKEIGSQMADTSADDGLDDDD---VEEEDDDVLDEA 405
Query: 455 ENFDPTKLK 481
+ F TK K
Sbjct: 406 DRFRDTKRK 414
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 32.3 bits (70), Expect = 0.37
Identities = 28/106 (26%), Positives = 46/106 (43%)
Frame = +2
Query: 134 LRDVDTNEKIVLPSAEDVAKEKQHNALLQGVELFQPSSLRKTETIEKNILPNAIDVATEK 313
LR T + L A+ EK+ + + E + ET EKN L + I+ +K
Sbjct: 2351 LRKAKTELESALEEAKAKITEKEESLVAFAAESKIVRDQLERETEEKNELTSQIESLVDK 2410
Query: 314 TQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNG 451
+K E+ S+ +K E ++N + + A KE+ K L G
Sbjct: 2411 VKK-----YEEASSTVMKENENLKRNLQMETRQLSAVKEEMKQLRG 2451
>SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)
Length = 1452
Score = 32.3 bits (70), Expect = 0.37
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Frame = +2
Query: 248 LRKTETIEKNILPNAIDVATEKTQKSLFDGIE-KFDSSQLKHTETQEKNPLPDKDAIEAE 424
LR + +++ + +D + + S +G + +D Q K E PD+D +E E
Sbjct: 805 LRLRRSKNQHLSSSLLDDDNDNAELSGDEGEDGAYDVKQRKRLEQHASYEAPDEDEMEIE 864
Query: 425 KEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 538
+E NG+E+ D K + PT DV Q+
Sbjct: 865 RE---LQNGLESGDEDDTKADAQRSETNSPTLDVETQQ 899
>SB_19898| Best HMM Match : Merozoite_SPAM (HMM E-Value=3.7)
Length = 446
Score = 31.1 bits (67), Expect = 0.85
Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 12/127 (9%)
Frame = +2
Query: 167 LPSAEDVAKEKQHNALLQGVELFQP---------SSLRKTETIEKNI-LPNAIDVATEKT 316
+P+ K+K QG LF +S KT + +NI + N++ ++ K
Sbjct: 218 IPNKASTLKKKNGQLFKQGKSLFHDKWSENGEDRNSTGKTNSSNENITVSNSVRMSEGK- 276
Query: 317 QKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHT--E 490
S+F + + + TET+E NP D +AE+ + G + T+ K T E
Sbjct: 277 --SVFKRNRPTEPASVPSTETKEANPNVTADTKQAEQNEGSMSEGTTSKTITENKTTNME 334
Query: 491 TCEKNPL 511
T K L
Sbjct: 335 TLRKEML 341
>SB_18643| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 1885
Score = 31.1 bits (67), Expect = 0.85
Identities = 33/130 (25%), Positives = 59/130 (45%)
Frame = +2
Query: 74 DLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVAKEKQHNALLQGVELFQPSSLR 253
DL + A D + E + L + E ++ P+ D KEK +A + Q L
Sbjct: 1745 DLKEPALDTR---ERSKSEILERPASGEAVLEPTELD--KEKSSSAQNIVEQALQDEELD 1799
Query: 254 KTETIEKNILPNAIDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEK 433
+ +TI + ++ I A + + L D E+ S+L+ T E+ ++ +EAE +
Sbjct: 1800 EDDTIVR-VVEQEIAEAFDLSTDQLNDAAERL-LSELEETLKNEEEVEKEEARLEAEAQA 1857
Query: 434 NKFLNGIENF 463
+K G +NF
Sbjct: 1858 DKSEEGKDNF 1867
>SB_39938| Best HMM Match : ANF_receptor (HMM E-Value=6.4e-14)
Length = 966
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 385 EEPASGQRCYRSGEGKEQIPERHRELRSH*AEAHGNVREEP 507
EEP+ + +G KE+ E RE R H + V+EEP
Sbjct: 840 EEPSDEEESEEAGREKEEEEEDQREGRDHNDDEESVVKEEP 880
>SB_16625| Best HMM Match : Death (HMM E-Value=1.5)
Length = 528
Score = 30.3 bits (65), Expect = 1.5
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 11/107 (10%)
Frame = +2
Query: 260 ETIEKNILPNAIDVATEKTQKSLFDGIEKFDSSQLKHTE-----------TQEKNPLPDK 406
+TIE++ + A T L DG+ D ++ +H + T E++P DK
Sbjct: 212 KTIEQDPTSDKSYKALRDTTHDLLDGLRYSDQAKEEHAKLIPKYHEIMIKTIEQDPTSDK 271
Query: 407 DAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEKSA 547
+ L+G+ +FD K +H + K IEQ+ ++
Sbjct: 272 SYKALRDTTHDLLDGLRDFDQAKEEHAKLIPKYHKIMIKTIEQDPTS 318
>SB_8597| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 632
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 125 TSCLRDVDTNEKIVLPSAEDVAKEKQHNALLQGVELFQPSSLRKTETIE 271
T +R V +I +PS + E+ H LL G+ L TET++
Sbjct: 74 TRIIRKVPELMEIFVPSTRSLISERNHGVLLTGITLVTVMCKLNTETLQ 122
>SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9)
Length = 413
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +2
Query: 65 SLKDLPKVATDLKSQLEGFNTSCL-RDVDTNEKIV 166
SLK L K+ TDL+S ++G ++ L ++V+ K+V
Sbjct: 333 SLKALAKICTDLESNIQGIKSNPLAKEVERTNKLV 367
>SB_14080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1190
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 360 WLESNFSIPSNKDFWVFSVATSIALGRMFFSIVSVFLNE 244
++ N ++P FW + + S+ +FF V VFLNE
Sbjct: 870 FVADNMTVPGESTFWYYIIVNSLIAVTVFF--VFVFLNE 906
>SB_7844| Best HMM Match : RasGEF (HMM E-Value=0.00058)
Length = 1299
Score = 29.5 bits (63), Expect = 2.6
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 11/103 (10%)
Frame = +2
Query: 47 SVSDTPSLKD--LPKVATDLKSQLEGFNTSCLRDVDT--NEKIVLPSAEDVAKEKQHNAL 214
S SD P+ D + A+D+ + + T DV T ++K+ L SA DV
Sbjct: 536 SDSDVPTTSDDQVTLSASDVPTTSDDQITPSASDVPTTSDDKVTL-SASDVPTTSDDQVT 594
Query: 215 LQGVEL-------FQPSSLRKTETIEKNILPNAIDVATEKTQK 322
L ++ PS+ T T + + P+AID+ T K K
Sbjct: 595 LSASDVPTTSDDPVTPSASDVTPTSDDQVTPSAIDIPTAKDDK 637
>SB_6454| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 233 FQPSSLRKTETIEKNILPNAIDVATEKTQKSLFDGIEKFDSSQ 361
F P T + I+ A ++ATE+T K + G+E+ D Q
Sbjct: 20 FLPHDDVGTRRADPQIVAGAAEIATEQTNKIIDKGLERVDEQQ 62
>SB_48586| Best HMM Match : DUF285 (HMM E-Value=1.7)
Length = 589
Score = 29.1 bits (62), Expect = 3.4
Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 2/129 (1%)
Frame = +2
Query: 86 VATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVAKEKQHNALLQGVELFQPSSLRKTET 265
VA D E N + DV E ++ A+DVAK+ V + S + K +
Sbjct: 67 VAKDCSMVTED-NVAKAGDVVAKESSLVTKADDVAKDISTVTKADDVVAKESSLVTKADD 125
Query: 266 IEKNI--LPNAIDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNK 439
+ K+I + A DVA + + + D + K DSS T T+ + D + + K
Sbjct: 126 VAKDISTVTKADDVAKDISTVTKADDVAK-DSS----TVTKADDVAKDSSTVTKADDVAK 180
Query: 440 FLNGIENFD 466
++ + N D
Sbjct: 181 DISTVTNSD 189
>SB_29288| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 275
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +2
Query: 365 KHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEK 502
+HTE + +P P K I+ E +++ + I+ KH+ +CE+
Sbjct: 212 RHTENAKSSPDPIKSEIDGEHSEDEKEHKIKVCPLVDKKHSHSCER 257
>SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)
Length = 1249
Score = 28.7 bits (61), Expect = 4.5
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Frame = +2
Query: 47 SVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDV-DTNEKIVLPSAEDVAKEKQHNALLQG 223
S SD P+ D A+D+KS + T DV T++ V PSA DV +
Sbjct: 617 SASDVPTTSDDQPSASDVKSTSDDQVTPPSSDVPTTSDDQVTPSASDVPTTSDDHV---- 672
Query: 224 VELFQPSSLRKTETIEKNILPNAIDV 301
PS+ T + + P+A DV
Sbjct: 673 ----TPSASDVPTTSDDQVTPSASDV 694
>SB_32651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 725
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Frame = +2
Query: 344 KFDSSQLKHTETQEKNPLPDKDAIEAEK-----EKNKFLNGIENFDPTKLKHTETCEKNP 508
K+ SSQ+ ET++ K ++E+ EK N +N + TK +H++ EKN
Sbjct: 166 KYSSSQIDKLETKQAIKSKKKKRRKSEEKELLGEKVDQFNSKKNLNRTKERHSKKMEKNR 225
Query: 509 LPTKDVIEQEK 541
Q+K
Sbjct: 226 QDNSKTRSQQK 236
>SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0)
Length = 644
Score = 28.7 bits (61), Expect = 4.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 568 VTRKCISLVSPYFNIDVSQIDL 633
+ KC L+SPY ++D+ DL
Sbjct: 13 IAAKCTQLISPYLDLDIKYFDL 34
>SB_34166| Best HMM Match : RVT_1 (HMM E-Value=1e-23)
Length = 385
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 332 DGIEKFDSSQLKHTETQEKNPLP 400
D +E+F S +H T +KNPLP
Sbjct: 206 DRLEQFSSQTGRHINTTKKNPLP 228
>SB_39577| Best HMM Match : DUF1213 (HMM E-Value=0.54)
Length = 240
Score = 28.3 bits (60), Expect = 6.0
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Frame = +3
Query: 87 SPQT*RVSSKASTPAVSVTS---TPMKRLCFRLLKTWQKRSNTTLYYKALNYSNRLH*G- 254
SP+T R +SK ++ S+ + T + R LKT K S T+ K+L S +
Sbjct: 65 SPKTSRKTSKKTSQKTSLNASRKTSRRTSLKRSLKTSPKTSPKTMRMKSLKTSPKTSPEI 124
Query: 255 KPRQ*KKTFSLTQ-*TSPLRRPRSLYSTVSRS 347
PR KT S T TSP P++ T S++
Sbjct: 125 GPRTSPKTSSKTSPKTSPKSSPKTSPKTSSKT 156
>SB_59536| Best HMM Match : Tetraspannin (HMM E-Value=1.3)
Length = 369
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -3
Query: 354 ESNFSIPSNKDFWVFSVATSIALGRMFFSIVSVFLNEDGWNSSTPC 217
E+ FS P+ KD+ + G + F +V++FLNE+ W C
Sbjct: 42 ENLFSCPT-KDYRAYGAMFIFVPGLLLF-LVAIFLNENFWKMVRGC 85
>SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1293
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Frame = +2
Query: 245 SLRKTETIEKNILPNAIDVATEKTQKSLFDGIEKFDSSQLKHTETQEKN--PLPDKDAIE 418
S RK IEKN+ +K K+ + +S+ +KH E Q N + K +E
Sbjct: 614 SSRKNGEIEKNLKEKKAKEQEDKASKAAVKKQKAAESASIKHVEKQGLNSEKIVAKKKVE 673
Query: 419 AEKEKNKFLNGIENFDPT-KLKHTET 493
+ + +K + +++ + K H++T
Sbjct: 674 SRESLDKKRSKVKSSKTSGKPVHSDT 699
>SB_26233| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 463
Score = 27.9 bits (59), Expect = 7.9
Identities = 20/85 (23%), Positives = 40/85 (47%)
Frame = +2
Query: 179 EDVAKEKQHNALLQGVELFQPSSLRKTETIEKNILPNAIDVATEKTQKSLFDGIEKFDSS 358
E +AK+K+ + E + + +K + E+ + E+ Q+ E+ +
Sbjct: 295 EKLAKKKEELKERKRQEKLEQKAKKKEK--ERQEREKEKEREKERIQQEKEKQKERREKE 352
Query: 359 QLKHTETQEKNPLPDKDAIEAEKEK 433
+ KH E +EK +K+ +E EK+K
Sbjct: 353 KQKHQEKKEKERQREKEKLEKEKQK 377
>SB_25209| Best HMM Match : Astacin (HMM E-Value=7.69999e-41)
Length = 533
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = -1
Query: 356 SNQTSRYRRIKTSGSSQ-WR 300
+N+TS+YRRI+ GS Q WR
Sbjct: 62 TNRTSKYRRIRRRGSRQTWR 81
>SB_13773| Best HMM Match : TolA (HMM E-Value=0.042)
Length = 1558
Score = 27.9 bits (59), Expect = 7.9
Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 10/123 (8%)
Frame = +2
Query: 101 KSQLEGFNTSCLRDVDTNEKIVLPSAEDVAKEKQHNALLQGVELFQPSSLRKTETIEKNI 280
K QL F++ + E +PS E K L+ +L + + K T E+ +
Sbjct: 1089 KKQLAEFDSETEKKFALAEMDAMPSLE--VKHAHARLELREKQLQELAGTMKDLTTEEEL 1146
Query: 281 LPN-------AIDVATEKTQKSLFDGIEKFDS---SQLKHTETQEKNPLPDKDAIEAEKE 430
+ + A + A E ++++F+ EK +S + + TE Q+K + +EAE E
Sbjct: 1147 IASYAEDAERAAEAAKEYRERTMFEIAEKINSIKEQRRQQTEAQKKKMDEEIRRLEAELE 1206
Query: 431 KNK 439
+ +
Sbjct: 1207 EER 1209
>SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26)
Length = 1064
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 1 SIPFLIKNILIHNGLLRE*HSLPERPPQGRHRPEESARRLQHQ 129
S+PF N N ++ +P R PQG H + A+ +QH+
Sbjct: 226 SLPFKKHNTFRQNVDIK---GIPSRLPQGEHSDRKKAQEVQHK 265
>SB_27965| Best HMM Match : Sec61_beta (HMM E-Value=0.84)
Length = 1737
Score = 27.9 bits (59), Expect = 7.9
Identities = 44/162 (27%), Positives = 60/162 (37%), Gaps = 8/162 (4%)
Frame = +2
Query: 47 SVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVAKEKQHNALLQGV 226
S S+ P LK P +A DL + +C T E + P D A N G
Sbjct: 1019 SKSELPILKSTPTLAADLSKGAKSL--AC----PTREGRIPP---DTASPISANEDFGG- 1068
Query: 227 ELFQPSSLRKTETIEKNILPNAIDVATEKTQKSL--FDGIEKF-----DSSQLKHTETQE 385
+PS+L K + E+N N D K SL FDG L H
Sbjct: 1069 ---KPSNLSKKDVTEENRSENVKDTHNSKNATSLDAFDGFFNLADIAAQFINLDHESDSV 1125
Query: 386 KNPLPD-KDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNP 508
K+ + D ++A+ +E E EN T C+K P
Sbjct: 1126 KSSVADAENAVPSEIESETSSIKFENVAFLNSNIT-VCDKKP 1166
>SB_15442| Best HMM Match : rve (HMM E-Value=0.00084)
Length = 822
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 284 PNAIDVATEKTQKSLFDGIEKFDSSQLKHTETQEK 388
PNA+ +A EK K++ DG + SQ + EK
Sbjct: 730 PNAVAIAREKADKTVMDGDVGYQISQEQRPTNCEK 764
>SB_10018| Best HMM Match : Sas10_Utp3 (HMM E-Value=7.6e-35)
Length = 430
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 281 LPNAIDVATEKTQ-KSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNK 439
LPNA V T+K+ K + + S + KHT+ ++ +PL + ++ +K K K
Sbjct: 261 LPNASMVQTKKSNLKVKLNMRHQAKSKKRKHTDKEDIDPLAYYEEVKMKKMKAK 314
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,840,593
Number of Sequences: 59808
Number of extensions: 424815
Number of successful extensions: 1477
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1451
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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