Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0547
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    27   2.3  
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha...    26   5.4  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    25   9.4  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    25   9.4  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    25   9.4  

>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 144 ANSTARVDNVSCYSCDQN 91
           +NS  R+DNV+CY C ++
Sbjct: 57  SNSEERLDNVTCYMCTKS 74


>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 541

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 115 DIVHTRRAIRSVSGNVELKNSVDEDGYSADY 207
           D+V   RA  ++     L N +D+DG +A Y
Sbjct: 442 DVVELTRACEAMGAGEVLLNCMDQDGSNAGY 472


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 151 SGNVELKNSVDEDGYSADYAAIFNIILWFGVV 246
           SG  E  +  DE+  S DY   F + LW  V+
Sbjct: 557 SGLFESNDGKDEESTSEDYNFFFGMKLWGQVI 588


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 220 NIILWFGVVFTFTLIAIVYAL 282
           NI  WF ++    LIA +Y L
Sbjct: 451 NIAFWFSIIIGIALIAALYIL 471


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 477 FSFYNKL-AFPRSGPTKKYYRFHDIARHEAW 566
           FSF +   A P   PTK+Y+ FHD +  E W
Sbjct: 188 FSFLSDYKADPSELPTKEYHVFHDHS-DEVW 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,451,649
Number of Sequences: 5004
Number of extensions: 47730
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)