Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0547
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0692 + 35585445-35586008,35586222-35586560                       29   4.2  
11_02_0078 - 8074247-8074837,8075815-8076341,8076453-8077022,807...    28   5.6  
08_02_0455 - 17344362-17344418,17344480-17344623,17344693-17344836     28   5.6  
08_02_1208 + 25306367-25306567,25306709-25306931,25307930-253081...    28   7.4  
10_01_0005 - 60264-61205                                               27   9.7  

>03_06_0692 + 35585445-35586008,35586222-35586560
          Length = 300

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +1

Query: 154 GNVELKNSVDEDGYSADYAAIFNIILWFGVVFTFTLIAI 270
           GN+E+ +  ++ G S D  AI +I+   G  F F +IAI
Sbjct: 114 GNLEMFDDSNDHGSSDDEGAIHDIVAIPGEGFQFNIIAI 152


>11_02_0078 -
           8074247-8074837,8075815-8076341,8076453-8077022,
           8077725-8077752
          Length = 571

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 117 HCPHAPCYSLGIWKCRTQ 170
           HCP APC S   W C  Q
Sbjct: 276 HCPDAPCCSANGWTCLHQ 293


>08_02_0455 - 17344362-17344418,17344480-17344623,17344693-17344836
          Length = 114

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -3

Query: 645 PNVSRPNLSYHSSKCNTSAPRHHF 574
           P+++RPN + H +KC TS P  HF
Sbjct: 30  PSITRPNATDHFTKCITSNP--HF 51


>08_02_1208 +
           25306367-25306567,25306709-25306931,25307930-25308175,
           25308636-25308686,25308804-25309064,25309159-25309211,
           25309292-25309661,25310068-25310882
          Length = 739

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +1

Query: 175 SVDEDGYSADYAAIFNIILW-FGVVFTFTLIAIVYALMDMDPGRDSIIYRMTNTRMK-KD 348
           S+D+ G  AD+  I +IILW F ++     + IV    D   G    +Y +    +  K 
Sbjct: 101 SLDDPG-EADFVGILSIILWTFTMICLVKYVFIVLKADDHGEGGTFALYSLLRQHVNFKG 159

Query: 349 N*SLQLQHL 375
           N  + + HL
Sbjct: 160 NMPVPVTHL 168


>10_01_0005 - 60264-61205
          Length = 313

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +1

Query: 103 AVTTDIVHTRRAIRSVSGNVELKNSVDED---GYSADYAAIFNIIL 231
           A T ++V   R +RSV G++    S+D+D    Y+   AA +++++
Sbjct: 170 AGTGNVVEAVRHVRSVMGDIRALRSMDDDEVFSYAKRIAAPYDLVM 215


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,493,821
Number of Sequences: 37544
Number of extensions: 296117
Number of successful extensions: 635
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)