Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0547
         (647 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58909| Best HMM Match : Renin_r (HMM E-Value=1.6e-05)               30   1.9  
SB_59633| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_3213| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-40)                27   9.9  
SB_20620| Best HMM Match : zf-HIT (HMM E-Value=8.5e-10)                27   9.9  

>SB_58909| Best HMM Match : Renin_r (HMM E-Value=1.6e-05)
          Length = 385

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
 Frame = +1

Query: 193 YSADYAAIFNIILWFGVVFTFTLIAIVYAL---MDMDPGRDSII-----YRMTNTRMKKD 348
           Y+  Y+AIFNI LW  VV   ++  I   L    D+ P   S +     +R  +  + KD
Sbjct: 288 YTPMYSAIFNIWLWLIVVIVLSVYVISLVLCGDSDICPEDSSRVMAEFKWRNMSVSLNKD 347

Query: 349 N*SLQLQHL 375
           N +++ QH+
Sbjct: 348 N-AMRTQHI 355


>SB_59633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 396

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -3

Query: 405 EINIALSSNLQVLKLKTLVVFLHPSVGHTI 316
           +I ++LS N+++L +  L+  L PSV H I
Sbjct: 163 KIRVSLSMNIRILAVTVLLALLAPSVTHAI 192


>SB_3213| Best HMM Match : zf-C2H2 (HMM E-Value=3.8e-40)
          Length = 595

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 633 RPNLSYHSSKCNTSAPRHHFSAAKLHVWRYHEIG 532
           RP  S   SKC++S+   HF   K   W + E+G
Sbjct: 290 RPQESTSPSKCDSSSSFLHFLKKKNISWGFDELG 323


>SB_20620| Best HMM Match : zf-HIT (HMM E-Value=8.5e-10)
          Length = 567

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +1

Query: 415 SMDVFFIKRHIRSVLSHSRFVFHFTIN*HSHEAGLQKNITDFMISPDMKLGRAEV 579
           S+DV F+   I+  L HS+   HF+ N    +AG  K+     I    K+   E+
Sbjct: 301 SIDVLFVDETIKHKLDHSKQNLHFSKN--FKQAGACKHTDKHKIKRHTKMSSPEM 353


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,565,876
Number of Sequences: 59808
Number of extensions: 366526
Number of successful extensions: 923
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)