Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0547
         (647 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    26   0.36 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   7.8  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   7.8  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   7.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   7.8  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 148 VSGNVELKNSVDEDGYSADYAAIFNIILWFGVVFTFTLIAI 270
           V  N E+  S  ++     +AAI   + +F V+FT+ +I I
Sbjct: 385 VENNSEVSKSRTKESAWRHFAAIIEWLSFFIVIFTYIIILI 425


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 457 LSHSRFVFHFTIN 495
           L+H  F FH TIN
Sbjct: 495 LNHKPFNFHITIN 507


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 457 LSHSRFVFHFTIN 495
           L+H  F FH TIN
Sbjct: 495 LNHKPFNFHITIN 507


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -3

Query: 195 VTILIDTILEFDISRYRANSTARVDNV 115
           +T +   +LEF +  Y + S    DN+
Sbjct: 312 LTFVFGALLEFALVNYASRSDMHSDNI 338


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -3

Query: 195 VTILIDTILEFDISRYRANSTARVDNV 115
           +T +   +LEF +  Y + S    DN+
Sbjct: 312 LTFVFGALLEFALVNYASRSDMHSDNI 338


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,345
Number of Sequences: 438
Number of extensions: 3212
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)