Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0547
         (647 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g38230.1 68415.m04695 stress-responsive protein, putative sim...    28   4.7  
At5g01680.1 68418.m00085 cation/hydrogen exchanger, putative (CH...    27   8.1  

>At2g38230.1 68415.m04695 stress-responsive protein, putative
           similar to ethylene-inducible protein HEVER [Hevea
           brasiliensis] SWISS-PROT:Q39963; contains Pfam domain,
           PF01680: SOR/SNZ family
          Length = 309

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
 Frame = +1

Query: 103 AVTTDIVHTRRAIRSVSGNVELKNSVDED---GYSADYAAIFNIIL 231
           A T ++V   R +RSV+G + L  S+D+D    Y+   AA +++++
Sbjct: 169 AGTGNVVEAVRHVRSVNGAIRLLRSMDDDEVFTYAKKIAAPYDLVV 214


>At5g01680.1 68418.m00085 cation/hydrogen exchanger, putative
           (CHX26) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 780

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 353 KVFSFSTCRLELSAIFISI*VLWMFFLSKDTFDQYCH 463
           K+ +    RL LS+I ++    W FFL   TFD + H
Sbjct: 192 KMLNSEPGRLALSSIMVANCFGWGFFLLLITFDSFLH 228


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,698,436
Number of Sequences: 28952
Number of extensions: 245616
Number of successful extensions: 538
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)