Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0546
(594 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.) 67 9e-12
SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 1e-09
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 1e-09
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 1e-09
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 1e-09
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 4e-09
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 6e-06
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 6e-06
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 7e-05
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_50648| Best HMM Match : Atrophin-1 (HMM E-Value=1.3) 31 0.70
SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_51159| Best HMM Match : DUF1140 (HMM E-Value=2.3) 28 6.5
SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_15898| Best HMM Match : Fork_head (HMM E-Value=0) 28 6.5
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0) 27 8.6
>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 67.3 bits (157), Expect = 9e-12
Identities = 32/40 (80%), Positives = 34/40 (85%)
Frame = +2
Query: 272 SWIVARRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 391
SWI RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 4 SWIYERRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 60.5 bits (140), Expect = 1e-09
Identities = 29/35 (82%), Positives = 31/35 (88%)
Frame = +2
Query: 287 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 391
RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 60.5 bits (140), Expect = 1e-09
Identities = 29/35 (82%), Positives = 31/35 (88%)
Frame = +2
Query: 287 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 391
RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 60.5 bits (140), Expect = 1e-09
Identities = 29/35 (82%), Positives = 31/35 (88%)
Frame = +2
Query: 287 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 391
RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 9 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 43
>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 60.5 bits (140), Expect = 1e-09
Identities = 29/35 (82%), Positives = 31/35 (88%)
Frame = +2
Query: 287 RRTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 391
RRT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 11 RRTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 45
>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 58.4 bits (135), Expect = 4e-09
Identities = 28/34 (82%), Positives = 30/34 (88%)
Frame = +2
Query: 290 RTSAKAFAKGVFINQERKLEVRRRLDTALVLTVN 391
RT+AKAFAK VFINQERKLE RRR DT LVLT+N
Sbjct: 29 RTTAKAFAKNVFINQERKLEDRRRSDTVLVLTIN 62
>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 48.0 bits (109), Expect = 6e-06
Identities = 23/27 (85%), Positives = 24/27 (88%)
Frame = +2
Query: 290 RTSAKAFAKGVFINQERKLEVRRRLDT 370
RT+AKAFAK VFINQERKLE RRR DT
Sbjct: 2 RTTAKAFAKNVFINQERKLEDRRRSDT 28
>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 48.0 bits (109), Expect = 6e-06
Identities = 24/36 (66%), Positives = 29/36 (80%), Gaps = 1/36 (2%)
Frame = +2
Query: 287 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 391
R+T+ ++ AK VFINQERKLE RRR DT LVLT+N
Sbjct: 8 RKTNYCESIAKNVFINQERKLEDRRRSDTVLVLTIN 43
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +1
Query: 265 VKFLDRRKTNISESICQRCFHQSRTKV 345
VKFLD RKTN ESI + F K+
Sbjct: 2 VKFLDLRKTNYCESIAKNVFINQERKL 28
>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 44.4 bits (100), Expect = 7e-05
Identities = 22/36 (61%), Positives = 28/36 (77%), Gaps = 1/36 (2%)
Frame = +2
Query: 287 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 391
R+T+ ++ + VFINQERKLE RRR DT LVLT+N
Sbjct: 8 RKTNYCESICQDVFINQERKLEDRRRSDTVLVLTIN 43
Score = 33.9 bits (74), Expect = 0.099
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = +1
Query: 265 VKFLDRRKTNISESICQRCFHQSRTKV 345
VKFLD RKTN ESICQ F K+
Sbjct: 2 VKFLDLRKTNYCESICQDVFINQERKL 28
>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/36 (58%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Frame = +2
Query: 287 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 391
R+T+ ++ + FINQERKLE RRR DT LVLT+N
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 268 KFLDRRKTNISESICQRCFHQSRTKV 345
+ L RKTN ESICQ CF K+
Sbjct: 3 EILGFRKTNYCESICQECFINQERKL 28
>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/36 (58%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Frame = +2
Query: 287 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 391
R+T+ ++ + FINQERKLE RRR DT LVLT+N
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = +1
Query: 265 VKFLDRRKTNISESICQRCFHQSRTKV 345
VKFLD RKTN ESICQ CF K+
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERKL 28
>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/36 (58%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Frame = +2
Query: 287 RRTS-AKAFAKGVFINQERKLEVRRRLDTALVLTVN 391
R+T+ ++ + FINQERKLE RRR DT LVLT+N
Sbjct: 8 RKTNYCESICQECFINQERKLEDRRRSDTVLVLTIN 43
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = +1
Query: 265 VKFLDRRKTNISESICQRCFHQSRTKV 345
VKFLD RKTN ESICQ CF K+
Sbjct: 2 VKFLDLRKTNYCESICQECFINQERKL 28
>SB_50648| Best HMM Match : Atrophin-1 (HMM E-Value=1.3)
Length = 1281
Score = 31.1 bits (67), Expect = 0.70
Identities = 17/55 (30%), Positives = 24/55 (43%)
Frame = +1
Query: 370 RPSSNRKYVI*RSADVTTMARRAASGKPKILDSGGSLVQVGPPNSSVSFQYEDHY 534
RP+ R V RS+ R G P+ S G+ P N +Q+ED+Y
Sbjct: 529 RPARGRGRVSDRSSATPVSHRPMTQGNPQSTQSNGTEQGEAPVNCCQDYQFEDNY 583
>SB_35396| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 53
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 204 QNSEVMINRDNWGHSY-CDVRGEILGSSQDEHQRKHLP 314
Q EV +++ GH Y C GE++ S++D H+ +P
Sbjct: 7 QCKEVESSKEILGHPYVCAFAGEVIQSTEDVHKPSWIP 44
>SB_51159| Best HMM Match : DUF1140 (HMM E-Value=2.3)
Length = 444
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 21 RRLKNAGSISKSYRGALR*VSRWADNFTLNKLECSKR 131
RRL G+ S R ALR W D+ + L+C +R
Sbjct: 168 RRLSPTGTTSGVARDALRPTRDWRDSPLSSSLQCQRR 204
>SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1696
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 453 WFPGSCPPSHCSNVGGSLDDIFTVRTRAVS 364
W+PG CPP C+ +L + TV + +S
Sbjct: 80 WYPGYCPPHKCAG-RNTLQECCTVYSPEIS 108
>SB_15898| Best HMM Match : Fork_head (HMM E-Value=0)
Length = 460
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -1
Query: 477 TPPGV-QNLWFPGSCPPSHCSNVGG 406
+P GV +N W PGS S+C++ GG
Sbjct: 174 SPYGVDENSWSPGSSQSSNCTSPGG 198
>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2735
Score = 27.5 bits (58), Expect = 8.6
Identities = 18/66 (27%), Positives = 28/66 (42%)
Frame = +1
Query: 298 SESICQRCFHQSRTKVRGSKAIRYRPSSNRKYVI*RSADVTTMARRAASGKPKILDSGGS 477
S+ CQ + S T + RP+S + D T +A RA +P +L S
Sbjct: 2436 SQESCQTGYQNSETCQASHNRHQTRPTSFQPSHTGYQPDTTPIASRATRPQPPLLTPIAS 2495
Query: 478 LVQVGP 495
++ GP
Sbjct: 2496 PIKPGP 2501
>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1449
Score = 27.5 bits (58), Expect = 8.6
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -3
Query: 283 DDPRISPLTSQYEC 242
DDPR+SP + QY C
Sbjct: 241 DDPRVSPTSQQYAC 254
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,348,825
Number of Sequences: 59808
Number of extensions: 401647
Number of successful extensions: 1192
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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