Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0546
         (594 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           30   0.065
AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    25   2.4  
AJ438610-11|CAD27483.1|  765|Anopheles gambiae hypothetical prot...    25   2.4  
AF042732-2|AAC18057.1|  179|Anopheles gambiae TU37B2 protein.          23   7.4  

>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 29.9 bits (64), Expect = 0.065
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -3

Query: 568 HRHE-QHSESTENNGLHIGTKLMNSVDQLALDSPRSPKSLVSRKLPAEPL 422
           H+H+ QH     +NG H G  LM+S  +    S  S K L     P  P+
Sbjct: 653 HQHQGQHHAQHHSNGTHHGPSLMSSARESCGASALSRKLLTESAPPIAPM 702


>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
           protein.
          Length = 1645

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 412 DVTTMARRAASGKPKILDSGGSLVQVGPPNSSVS 513
           D  T +  AASG    LD+  +L + G P+S+ S
Sbjct: 184 DAPTTSNMAASGDETDLDAITTLAESGIPSSNTS 217


>AJ438610-11|CAD27483.1|  765|Anopheles gambiae hypothetical protein
           protein.
          Length = 765

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 412 DVTTMARRAASGKPKILDSGGSLVQVGPPNSSVS 513
           D  T +  AASG    LD+  +L + G P+S+ S
Sbjct: 185 DAPTTSNMAASGDETDLDAITTLAESGIPSSNTS 218


>AF042732-2|AAC18057.1|  179|Anopheles gambiae TU37B2 protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 7.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 272 SWIVARRTSAKAFAKGVFINQERKLEVRR 358
           +W++  RT      KG    Q +KLE R+
Sbjct: 23  TWVMVYRTEKYQKLKGEVEKQSKKLEKRK 51


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 645,474
Number of Sequences: 2352
Number of extensions: 12693
Number of successful extensions: 22
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 57188952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)