Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0546
         (594 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-1608|ABC66062.1| 1526|Drosophila melanogaster CG3845-PC...    31   1.6  
AB096103-1|BAD83642.1| 1526|Drosophila melanogaster hypothetical...    31   1.6  
AJ542581-1|CAD65868.3|  965|Drosophila melanogaster gag protein ...    29   3.6  
AY051846-1|AAK93270.1| 1126|Drosophila melanogaster LD34905p pro...    28   8.3  
AE014298-743|AAN09142.1| 1126|Drosophila melanogaster CG4165-PD,...    28   8.3  
AE014298-742|AAN09141.1| 1126|Drosophila melanogaster CG4165-PC,...    28   8.3  
AE014298-741|AAN09140.1| 1126|Drosophila melanogaster CG4165-PB,...    28   8.3  
AE014298-740|AAF46033.1| 1126|Drosophila melanogaster CG4165-PA,...    28   8.3  

>AE013599-1608|ABC66062.1| 1526|Drosophila melanogaster CG3845-PC,
           isoform C protein.
          Length = 1526

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = -1

Query: 477 TPPGVQNLWFPGSCPPSHCSNVGGSLDDIFTVRTRAVSNRLRTSNFR 337
           TPP +   W P S  P H        D +F  R R + N+L    F+
Sbjct: 527 TPPPITGRWIPPSLRPQHGLTQSEKNDAVFR-RVRGILNKLTPEKFQ 572


>AB096103-1|BAD83642.1| 1526|Drosophila melanogaster hypothetical
           protein protein.
          Length = 1526

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = -1

Query: 477 TPPGVQNLWFPGSCPPSHCSNVGGSLDDIFTVRTRAVSNRLRTSNFR 337
           TPP +   W P S  P H        D +F  R R + N+L    F+
Sbjct: 527 TPPPITGRWIPPSLRPQHGLTQSEKNDAVFR-RVRGILNKLTPEKFQ 572


>AJ542581-1|CAD65868.3|  965|Drosophila melanogaster gag protein
           protein.
          Length = 965

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -3

Query: 562 HEQHSESTENNGLHIGTKLMNSVDQLALDSPRSPKSLVSRKLPAEPL 422
           H    +  EN   +I  K   S+D  A D+  +  S++  KLP+ PL
Sbjct: 74  HSLSHKEKENMNTNIAQKDPLSIDNTAADTDGAKSSILKGKLPSPPL 120


>AY051846-1|AAK93270.1| 1126|Drosophila melanogaster LD34905p
           protein.
          Length = 1126

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 466 SGGSLVQVGPPNSSVSFQYEDHYFLCFRC 552
           +G S   VGP  + V+F++++  +LC +C
Sbjct: 86  AGASEGAVGPGGNPVTFEFDNTLWLCLKC 114


>AE014298-743|AAN09142.1| 1126|Drosophila melanogaster CG4165-PD,
           isoform D protein.
          Length = 1126

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 466 SGGSLVQVGPPNSSVSFQYEDHYFLCFRC 552
           +G S   VGP  + V+F++++  +LC +C
Sbjct: 86  AGASEGAVGPGGNPVTFEFDNTLWLCLKC 114


>AE014298-742|AAN09141.1| 1126|Drosophila melanogaster CG4165-PC,
           isoform C protein.
          Length = 1126

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 466 SGGSLVQVGPPNSSVSFQYEDHYFLCFRC 552
           +G S   VGP  + V+F++++  +LC +C
Sbjct: 86  AGASEGAVGPGGNPVTFEFDNTLWLCLKC 114


>AE014298-741|AAN09140.1| 1126|Drosophila melanogaster CG4165-PB,
           isoform B protein.
          Length = 1126

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 466 SGGSLVQVGPPNSSVSFQYEDHYFLCFRC 552
           +G S   VGP  + V+F++++  +LC +C
Sbjct: 86  AGASEGAVGPGGNPVTFEFDNTLWLCLKC 114


>AE014298-740|AAF46033.1| 1126|Drosophila melanogaster CG4165-PA,
           isoform A protein.
          Length = 1126

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 466 SGGSLVQVGPPNSSVSFQYEDHYFLCFRC 552
           +G S   VGP  + V+F++++  +LC +C
Sbjct: 86  AGASEGAVGPGGNPVTFEFDNTLWLCLKC 114


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,514,041
Number of Sequences: 53049
Number of extensions: 601082
Number of successful extensions: 1705
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1705
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2400202284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)