Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0546
         (594 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10890.1 68417.m01772 expressed protein                             29   3.1  
At3g02170.1 68416.m00190 expressed protein                             28   4.1  
At3g49060.1 68416.m05360 protein kinase family protein / U-box d...    27   7.1  
At3g17465.1 68416.m02230 ribosomal protein L3 family protein           27   7.1  
At5g38320.1 68418.m04625 expressed protein  ; expression support...    27   9.4  
At3g12955.1 68416.m01614 auxin-responsive protein-related simila...    27   9.4  
At2g36350.1 68415.m04461 protein kinase, putative similar to pro...    27   9.4  
At2g11620.1 68415.m01249 hypothetical protein                          27   9.4  

>At4g10890.1 68417.m01772 expressed protein
          Length = 527

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 283 RKTNISESICQRCFHQS-RTKVRGSKAIRYRPSSNRKYVI 399
           ++T I   +C RC+H S R K+R S   R   S++   ++
Sbjct: 194 KQTKICSRVCSRCYHYSMRQKLRHSLHTRILKSNSENAIL 233


>At3g02170.1 68416.m00190 expressed protein
          Length = 905

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = -3

Query: 568 HRHEQHSESTENNGLHIGTKLMNSVDQLALDSP----RSPKSLVSR-KLPAEP 425
           HR         NNG  +G+KL     +L+LDS     RSP++  +R   P EP
Sbjct: 207 HRLSYDEREMRNNGFRVGSKL-KETPRLSLDSRSNSFRSPRADAARSSCPEEP 258


>At3g49060.1 68416.m05360 protein kinase family protein / U-box
           domain-containing protein contains Pfam profile: PF00069
           Eukaryotic protein kinase domain
          Length = 805

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -2

Query: 320 HLWQMLSLMFVLRRSKNFTSNVAIRMPPVIPINHYLGVLKTNKIE 186
           H+W +     +  R+ N  SN    MPP++ ++      K+ K+E
Sbjct: 162 HIWFLCKGYLIFTRASNDDSNNRQTMPPLVQLDSDNETRKSEKLE 206


>At3g17465.1 68416.m02230 ribosomal protein L3 family protein
          Length = 324

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 338 RKLEVRRRLDTALVLTVNMSSSDPPTLLQWLGGQLPG 448
           RK+  R   D   V  V +   DP   L W+ GQ+PG
Sbjct: 234 RKMAGRMGADQRTVKNVWVYKIDPARNLMWVRGQVPG 270


>At5g38320.1 68418.m04625 expressed protein  ; expression supported
           by MPSS
          Length = 212

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -2

Query: 281 RSKNFTSNVAIRMPPVIPINHYLGVLKTNKIEPRSYSI-IPCTKYSSS 141
           RSK       +  P +IPI  +  VL+  +I  + Y + +P   Y+S+
Sbjct: 85  RSKTDKYKTGLPRPEIIPIEDFEPVLEIEEIGDQEYEVKLPLLPYNST 132


>At3g12955.1 68416.m01614 auxin-responsive protein-related similar
           to indole-3-acetic acid induced protein arg7 (SP:P32295)
           [Vigna radiata]
          Length = 139

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 29  KKRRFNIKILSRCSSVSVEVGRQFYFEQIR 118
           KK R  + +L RC SVS ++GR + +  +R
Sbjct: 3   KKMRL-MMMLRRCKSVSTQLGRSYSYTSLR 31


>At2g36350.1 68415.m04461 protein kinase, putative similar to
           protein kinase KIPK (KCBP-interacting protein kinase)
           [Arabidopsis thaliana] gi|7716430|gb|AAF68383
          Length = 949

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 132 PALSTLICSK*NCRPTSTLTEEH 64
           P+ S L+C K +C   ST TE H
Sbjct: 391 PSASQLLCQKCHCAVKSTSTENH 413


>At2g11620.1 68415.m01249 hypothetical protein 
          Length = 491

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 474 PPGVQNLWFPGSCPPSHCSNVGGS 403
           PPG  + WFP S P   C+N G S
Sbjct: 105 PPGANDHWFPYSDPA--CTNSGAS 126


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,584,696
Number of Sequences: 28952
Number of extensions: 285968
Number of successful extensions: 709
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)