Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0544
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch...    29   0.38 
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    29   0.38 
SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3 family|Schizosa...    27   2.7  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    27   2.7  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    25   6.2  
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo...    25   8.1  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    25   8.1  

>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 683

 Score = 29.5 bits (63), Expect = 0.38
 Identities = 18/68 (26%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
 Frame = +1

Query: 61  VKCLGDIAFVLIKTIADMKCLTIAALLFVAGLS-IAEKYTDKYDNIDVDEILENRKLLVP 237
           +KCLGD+A  +   I D  C++I   ++   +S + ++ T   + + + +  +   LL+P
Sbjct: 376 IKCLGDVALKVPSVIND--CISIFLEIYELNISYMVQEVTVVMETV-LRKYPQKIDLLLP 432

Query: 238 YIKCVLDE 261
           Y+  V++E
Sbjct: 433 YLSRVIEE 440


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 29.5 bits (63), Expect = 0.38
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = +1

Query: 238  YIKCVLDEGRCTPDGKELKAHIK-DGMQTACAKCTDKQKVSARKIVKHIK--QHEADYWE 408
            +I CVL +G        +    K +G Q  C  C D  K    +++KH+K  + E+ Y +
Sbjct: 1336 HISCVLTQGAYIDLISCITKFAKLNGNQKFCLSCVDMLKNLEHELIKHLKHMKKESVYSK 1395

Query: 409  QMKAKY 426
            +++ +Y
Sbjct: 1396 KLEEEY 1401


>SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 328 AKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYDPKD 438
           A  +D+++   R  V H K H   Y +  K  +DPKD
Sbjct: 12  AASSDEERPEMRS-VSHSKSHLEGYDDDHKIAFDPKD 47


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = -2

Query: 194 MLSYLSVYFSAIDKPATNKSAAIVRHFMSAM 102
           +++ LSVY+S   +   +K   +V+HFM+++
Sbjct: 540 LMNCLSVYYSKYFEGKDSKKFTLVKHFMNSL 570


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +1

Query: 70  LGDIAFVLIKTIADMKCLTIAALLFVAGLSIAEKYTDKYDNID-VDEILENRKLL 231
           L  +  V IK     +   +    F+  ++I EKY + YD+++ VDE   ++ ++
Sbjct: 710 LNTLGPVTIKLACGTEFSFMKPACFLKNVAIGEKYVEPYDHMEIVDETTGDKAVI 764


>SPAC3A12.17c |cys12|cys1b|cysteine synthase
           Cys12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 92  NTKAMSPRHLTQIQCTCQLPRAEFLQPGGS 3
           NTK +  + L+Q      L +AEFL PG S
Sbjct: 52  NTKMVRIKSLSQATGCDILAKAEFLNPGNS 81


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 350 RCQPERSLNTLSSTKLITGSR*RPNMIPKMNSK 448
           +  PE    ++S T+  T  +  P+ +PKMN K
Sbjct: 432 KVNPEPHSESISDTRPSTPRKVPPSTVPKMNPK 464


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,507,400
Number of Sequences: 5004
Number of extensions: 50120
Number of successful extensions: 135
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)