Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0544
(585 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0315 + 22318155-22318210,22319743-22319769,22319868-223199... 30 1.2
08_02_0981 + 23266174-23266689,23268389-23268549,23269068-232693... 30 1.6
12_02_0422 - 18934190-18934344,18935687-18936227 28 6.3
12_01_0339 + 2603351-2603891,2604048-2604226 28 6.3
10_08_0618 + 19307658-19308584,19308690-19309082 28 6.3
02_01_0135 + 967172-967229,968316-968657,968936-969015,969063-96... 28 6.3
11_01_0779 + 6518556-6518601,6519825-6519967,6520091-6520114,652... 27 8.3
06_01_0958 - 7380021-7380401,7380771-7381046,7381184-7381582 27 8.3
01_06_1125 + 34683184-34684776 27 8.3
>11_06_0315 +
22318155-22318210,22319743-22319769,22319868-22319990,
22320867-22321110,22321487-22321981
Length = 314
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/67 (22%), Positives = 29/67 (43%)
Frame = +1
Query: 256 DEGRCTPDGKELKAHIKDGMQTACAKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYDPK 435
++ + D KELK +KD + K +D+ K + K V + + + + P
Sbjct: 227 EQKKALKDSKELKKALKDSKEQGSQKDSDELKPKSNKRVTFAEVEPEKELKASNSDWHPT 286
Query: 436 DEFKEIY 456
E+ +Y
Sbjct: 287 SEYHSVY 293
>08_02_0981 +
23266174-23266689,23268389-23268549,23269068-23269309,
23270180-23270284,23270746-23270902,23271860-23272028,
23272598-23272638,23273151-23273216,23273524-23273779
Length = 570
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +1
Query: 355 SARKIVKHIKQHEADYWEQMKAKYD-PKDEFKEIYEGFLAGQN*TCYKCLRWYNRI 519
S K +KHI ++ + + ++ KYD P D FK + + +A + +C C+ +I
Sbjct: 374 SIAKTMKHIASNQEAFNQSLRWKYDGPSDSFKALID--MAAVHSSCRLCIHVATKI 427
>12_02_0422 - 18934190-18934344,18935687-18936227
Length = 231
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -2
Query: 86 KAMSPRHLTQIQCTCQLPRAEFL 18
K + P + I CTC+LPR++F+
Sbjct: 114 KHLPPGDPSVIDCTCELPRSDFV 136
>12_01_0339 + 2603351-2603891,2604048-2604226
Length = 239
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -2
Query: 86 KAMSPRHLTQIQCTCQLPRAEFL 18
K + P + I CTC+LPR++F+
Sbjct: 114 KHLPPGDPSVIDCTCELPRSDFV 136
>10_08_0618 + 19307658-19308584,19308690-19309082
Length = 439
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 196 DVDEILENRKLLVPYIKCVLDEG-RCTPDGKELKAH 300
D DEI E+ +PY+K V+ EG R P G + AH
Sbjct: 321 DHDEITEDDTQKMPYLKAVILEGLRKHPPGHFVLAH 356
>02_01_0135 +
967172-967229,968316-968657,968936-969015,969063-969698,
969819-971527,971563-972514,972821-973273,974303-974497
Length = 1474
Score = 27.9 bits (59), Expect = 6.3
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = +1
Query: 160 IAEKYTDKYDNIDVDEILENRKLLVPYIKCVLDEGRCTPDGKELKAHIKDGMQTACAKCT 339
+A + K DN + E L+ K L+ + V+DE D L+ HI+ G + A CT
Sbjct: 88 LAAAESSKIDNRPLSESLDELKELLYDAEDVMDE----LDYYRLQQHIEGGKGSTAASCT 143
Query: 340 DKQ 348
+ +
Sbjct: 144 NPE 146
>11_01_0779 +
6518556-6518601,6519825-6519967,6520091-6520114,
6520140-6520286,6521957-6522142,6522232-6522490,
6522738-6522969,6523081-6523231,6523322-6523499,
6523916-6524191,6524414-6524642,6524754-6524904,
6525013-6525192
Length = 733
Score = 27.5 bits (58), Expect = 8.3
Identities = 16/87 (18%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = +1
Query: 163 AEKYTDKYDNIDVDEILENRKLLVPYIKCVLDEGRCTPDGKELKAHIKD-GMQTACAKCT 339
+ + T +Y +++ D+IL+ ++ + + CV + + P E+ + D G +
Sbjct: 404 SSQITSRYPSLEEDDILQAKRCIESGLNCVETDPKKRPTISEIIVKLTDKGTEVKQGVLP 463
Query: 340 DKQKVSARKIVKHIKQHEADYWEQMKA 420
+ + V+ +K++ + D Q +A
Sbjct: 464 NGELVAVKKLLDSVTAVNQDKQFQSEA 490
>06_01_0958 - 7380021-7380401,7380771-7381046,7381184-7381582
Length = 351
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Frame = +1
Query: 364 KIVKHIKQHEADYWEQMKAKYDPKDEFKE--IYEGFLAGQN*TCYKCLRWYNRIIV--FF 531
+IVK++ E D+ + +DP D+ + +++ L+G N KC+R + ++ +F
Sbjct: 250 EIVKNVNLFEMDHINLFECNWDPYDDSQGDIVHDSALSGMN--VAKCIRAALQPLIASYF 307
Query: 532 L*DIINGFWSVNSNHI 579
DI+N + ++ +
Sbjct: 308 GEDILNALFEEYAHRV 323
>01_06_1125 + 34683184-34684776
Length = 530
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/32 (34%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Frame = +1
Query: 385 QHEADYWEQMKAK-YDPKDEFKEIYEGFLAGQ 477
+ A Y+E+MKAK + P+ + +E+ + +L+G+
Sbjct: 475 EESAKYYEEMKAKGFPPEKKTEEMIQAWLSGR 506
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,416,171
Number of Sequences: 37544
Number of extensions: 322265
Number of successful extensions: 790
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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