Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0544
(585 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25764| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_44497| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_59334| Best HMM Match : zf-AN1 (HMM E-Value=0.72) 30 1.6
SB_26762| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_21233| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_11212| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_50444| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_50135| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_55485| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_14889| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_56020| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_54935| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_50042| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_17901| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_13552| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_10991| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_9111| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_5856| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_18484| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_50847| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_40500| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_38326| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_37251| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_56430| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_35352| Best HMM Match : zf-C2H2 (HMM E-Value=0.0016) 27 8.5
SB_21764| Best HMM Match : TPP_enzyme_N (HMM E-Value=1.1e-06) 27 8.5
SB_59324| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_54757| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_53639| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_53089| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_52722| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_49504| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_47635| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_43613| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_43412| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_31530| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_31130| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_31108| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_24786| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_21994| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_14396| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_13739| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_9174| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_8174| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_4560| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_4159| Best HMM Match : Vpu (HMM E-Value=2) 27 8.5
>SB_25764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -3
Query: 43 ASCLVPNSCSPGDP 2
ASC NSCSPGDP
Sbjct: 7 ASCFASNSCSPGDP 20
>SB_44497| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -3
Query: 61 LRFSVLASCLVPNSCSPGDP 2
LRFS+ + + NSCSPGDP
Sbjct: 14 LRFSIFWTDRLSNSCSPGDP 33
>SB_59334| Best HMM Match : zf-AN1 (HMM E-Value=0.72)
Length = 1161
Score = 29.9 bits (64), Expect = 1.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 448 EIYEGFLAGQN*TCYKCLRWY 510
+I +G L GQ C++CLRW+
Sbjct: 117 DINDGSLCGQTQCCHRCLRWW 137
>SB_26762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 29.9 bits (64), Expect = 1.6
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = -3
Query: 37 CLVPNSCSPGDP 2
CL+ NSCSPGDP
Sbjct: 69 CLISNSCSPGDP 80
>SB_21233| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 29.9 bits (64), Expect = 1.6
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 52 SVLASCLVPNSCSPGDP 2
+++ C V NSCSPGDP
Sbjct: 27 NIICICTVSNSCSPGDP 43
>SB_11212| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1175
Score = 29.9 bits (64), Expect = 1.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 448 EIYEGFLAGQN*TCYKCLRWY 510
+I +G L GQ C++CLRW+
Sbjct: 838 DINDGSLCGQTQCCHRCLRWW 858
>SB_50444| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 70 DT*LRFSVLASCLVPNSCSPGDP 2
DT + ++++ V NSCSPGDP
Sbjct: 6 DTLISANIISIAFVSNSCSPGDP 28
>SB_50135| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 142
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = -3
Query: 55 FSVLASCLVPNSCSPGDP 2
F L S L+ NSCSPGDP
Sbjct: 10 FVELISFLISNSCSPGDP 27
>SB_55485| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 125 VRHFMSAMVLINTKAMSPRHLTQIQCTCQLPRAEFLQPGGS 3
++HF ++ N K + +IQ P EFLQPGGS
Sbjct: 1 MKHFTDTLISANIKIIFQEADQEIQYN---PEIEFLQPGGS 38
>SB_14889| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -2
Query: 125 VRHFMSAMVLINTKAMSPRHLTQIQCTCQLPRAEFLQPGGS 3
++HF LI+ +S H +C+C EFLQPGGS
Sbjct: 1 MKHFTDT--LISANIVSIEHTEHKRCSC----IEFLQPGGS 35
>SB_56020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 309
Score = 28.3 bits (60), Expect = 4.9
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = -3
Query: 580 KYGSNLQTKSHL----*CLTKKKQLFCCTTASIYNKFSFDQRGIPRRFL*IHLWDHIWPS 413
KYG L T+SHL +++K+ + T S N FS G R L W+ I+ S
Sbjct: 95 KYGHRLTTRSHLSEFIPLISEKENMLIKTEISASNGFSVIFDGSTRLVLETRYWNTIF-S 153
Query: 412 SAPSNQL 392
+P+ +L
Sbjct: 154 HSPAARL 160
>SB_54935| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +1
Query: 1 VDPPGCRNSARGS 39
VDPPGCRNS GS
Sbjct: 16 VDPPGCRNSMIGS 28
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +1
Query: 391 EADYWEQMKAKYDPKDEFKEIY-EGFLAG 474
+AD W + A YD +D F +IY G L G
Sbjct: 5963 DADEWYHVAATYDSRDRFAKIYINGELKG 5991
>SB_50042| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 144
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 49 VLASCLVPNSCSPGDP 2
V +C+ NSCSPGDP
Sbjct: 14 VQGNCMKSNSCSPGDP 29
>SB_17901| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/24 (62%), Positives = 16/24 (66%), Gaps = 4/24 (16%)
Frame = -3
Query: 61 LRFSVLA----SCLVPNSCSPGDP 2
+R SVLA LV NSCSPGDP
Sbjct: 13 IRISVLALKSRPMLVSNSCSPGDP 36
>SB_13552| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -3
Query: 46 LASCLVPNSCSPGDP 2
L+S L+ NSCSPGDP
Sbjct: 3 LSSFLLSNSCSPGDP 17
>SB_10991| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -2
Query: 125 VRHFMSAMVLINTKAMSPRH--LTQIQCTCQLPRAEFLQPGGS 3
++HF ++ N + + H L+ C EFLQPGGS
Sbjct: 1 MKHFTDTLISANIELIEVCHQKLSDFTYYCCATHIEFLQPGGS 43
>SB_9111| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -3
Query: 37 CLVPNSCSPGDP 2
C V NSCSPGDP
Sbjct: 25 CYVSNSCSPGDP 36
>SB_5856| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -3
Query: 46 LASCLVPNSCSPGDP 2
L S ++ NSCSPGDP
Sbjct: 22 LGSLIISNSCSPGDP 36
>SB_18484| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/15 (80%), Positives = 12/15 (80%), Gaps = 1/15 (6%)
Frame = -3
Query: 43 ASCLVP-NSCSPGDP 2
A C VP NSCSPGDP
Sbjct: 51 AHCRVPSNSCSPGDP 65
>SB_50847| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 161
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Frame = -2
Query: 125 VRHFMSAMVLINTKAMSPRHLTQIQCTCQ-----LPRAEFLQPGGS 3
++HF ++ N K ++P + I T Q + EFLQPGGS
Sbjct: 1 MKHFTDTLISANIKCLAPFGKSSIITTEQVVILYITIIEFLQPGGS 46
>SB_40500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 92
Score = 27.9 bits (59), Expect = 6.4
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +1
Query: 1 VDPPGCRNSARG 36
VDPPGCRNS G
Sbjct: 16 VDPPGCRNSIEG 27
>SB_38326| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 104
Score = 27.9 bits (59), Expect = 6.4
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +1
Query: 1 VDPPGCRNSARGS 39
VDPPGCRNS R +
Sbjct: 16 VDPPGCRNSIRST 28
>SB_37251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = -2
Query: 83 AMSPRHLTQIQCTCQLP--RAEFLQPGGS 3
A SPRH T + Q + EFLQPGGS
Sbjct: 7 APSPRHSTYLSLHAQSSSLQIEFLQPGGS 35
>SB_56430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 52 SVLASCLVPNSCSPGDP 2
S ++ L+ NSCSPGDP
Sbjct: 27 STVSISLISNSCSPGDP 43
>SB_35352| Best HMM Match : zf-C2H2 (HMM E-Value=0.0016)
Length = 221
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +1
Query: 256 DEGRCTPDGKELKAHIKDGMQTACAKCTDKQKVSARKIVKHIKQHEADYWEQMKAKYD-P 432
D +C+ DG+ + +K Q A K + +K R++ + E + K K+D P
Sbjct: 95 DVAKCSQDGEGVVGPLKQLQQLAGGKASSTKKHQERQVAMVVNLSEVCNGVEAKPKHDSP 154
Query: 433 KD 438
D
Sbjct: 155 MD 156
>SB_21764| Best HMM Match : TPP_enzyme_N (HMM E-Value=1.1e-06)
Length = 183
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/11 (90%), Positives = 10/11 (90%)
Frame = +1
Query: 1 VDPPGCRNSAR 33
VDPPGCRNS R
Sbjct: 16 VDPPGCRNSIR 26
>SB_59324| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -3
Query: 37 CLVPNSCSPGDP 2
CL NSCSPGDP
Sbjct: 13 CLRSNSCSPGDP 24
>SB_54757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 52 SVLASCLVPNSCSPGDP 2
S ++ L+ NSCSPGDP
Sbjct: 27 STVSISLISNSCSPGDP 43
>SB_53639| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 58 RFSVLASCLVPNSCSPGDP 2
RF V+ + NSCSPGDP
Sbjct: 16 RFRVIIAVRRSNSCSPGDP 34
>SB_53089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 27.5 bits (58), Expect = 8.5
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -3
Query: 49 VLASCLVPNSCSPGDP 2
+ A+ ++ NSCSPGDP
Sbjct: 9 ISANIIISNSCSPGDP 24
>SB_52722| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 27.5 bits (58), Expect = 8.5
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -3
Query: 40 SCLVPNSCSPGDP 2
+C + NSCSPGDP
Sbjct: 8 TCALSNSCSPGDP 20
>SB_49504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/17 (76%), Positives = 13/17 (76%), Gaps = 2/17 (11%)
Frame = -2
Query: 47 TCQLP--RAEFLQPGGS 3
TC LP R EFLQPGGS
Sbjct: 8 TCALPQDRIEFLQPGGS 24
>SB_47635| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 52 SVLASCLVPNSCSPGDP 2
S ++ L+ NSCSPGDP
Sbjct: 27 STVSISLISNSCSPGDP 43
>SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +1
Query: 1 VDPPGCRNSARGS 39
VDPPGCRNS G+
Sbjct: 33 VDPPGCRNSIDGN 45
>SB_43613| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 52 SVLASCLVPNSCSPGDP 2
S ++ L+ NSCSPGDP
Sbjct: 27 STVSISLISNSCSPGDP 43
>SB_43412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 52 SVLASCLVPNSCSPGDP 2
S ++ L+ NSCSPGDP
Sbjct: 27 STVSISLISNSCSPGDP 43
>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3367
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 47 YTESESSVWVTSLLC*LKPLQT*SV*QLLHFYSWRAYRL 163
Y+ E S WV + ++PL++ S+ QL+ ++ A RL
Sbjct: 2737 YSPREMSRWVRGICEAMRPLESMSIEQLVRIWAHEALRL 2775
>SB_31530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 661
Score = 27.5 bits (58), Expect = 8.5
Identities = 24/107 (22%), Positives = 43/107 (40%)
Frame = +1
Query: 193 IDVDEILENRKLLVPYIKCVLDEGRCTPDGKELKAHIKDGMQTACAKCTDKQKVSARKIV 372
+ D LE+ + PY C+ ++ G + ++ Q AK K+ S +
Sbjct: 541 VPCDRKLESAFAINPYPTCLYEKALAVRLGLR-DSRVQVWFQNRRAK--SKRNRSGCQSS 597
Query: 373 KHIKQHEADYWEQMKAKYDPKDEFKEIYEGFLAGQN*TCYKCLRWYN 513
+ Q+E DY+ + Y PK+ G+ CY+ L Y+
Sbjct: 598 TYRGQNEGDYFSPTASDYSPKNSEYHTNTSDCFGEARECYEELSTYD 644
>SB_31130| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 27.5 bits (58), Expect = 8.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3
Query: 46 LASCLVPNSCSPGDP 2
+++C NSCSPGDP
Sbjct: 3 ISTCEASNSCSPGDP 17
>SB_31108| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 52 SVLASCLVPNSCSPGDP 2
S ++ L+ NSCSPGDP
Sbjct: 27 STVSISLISNSCSPGDP 43
>SB_24786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/21 (57%), Positives = 17/21 (80%), Gaps = 2/21 (9%)
Frame = -3
Query: 58 RFSVLA--SCLVPNSCSPGDP 2
R+++L+ + LV NSCSPGDP
Sbjct: 16 RYAILSPRARLVSNSCSPGDP 36
>SB_21994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 52 SVLASCLVPNSCSPGDP 2
S ++ L+ NSCSPGDP
Sbjct: 28 STVSISLISNSCSPGDP 44
>SB_14396| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 70 DT*LRFSVLASCLVPNSCSPGDP 2
DT + +++ S + NSCSPGDP
Sbjct: 6 DTLISANIVLSRVSSNSCSPGDP 28
>SB_13739| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = -2
Query: 92 NTKAMSPRHLTQIQCTCQL---PRAEFLQPGGS 3
N KA S +I CT L P EFLQPGGS
Sbjct: 11 NPKAPSTDISERICCTTLLQGYPNIEFLQPGGS 43
>SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +1
Query: 1 VDPPGCRNSARG 36
VDPPGCRNS G
Sbjct: 92 VDPPGCRNSIAG 103
>SB_9174| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 70 DT*LRFSVLASCLVPNSCSPGDP 2
DT + ++ C NSCSPGDP
Sbjct: 6 DTLISANIENKCCRSNSCSPGDP 28
>SB_8174| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 52 SVLASCLVPNSCSPGDP 2
S ++ L+ NSCSPGDP
Sbjct: 27 STVSISLISNSCSPGDP 43
>SB_4560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 52 SVLASCLVPNSCSPGDP 2
S ++ L+ NSCSPGDP
Sbjct: 25 STVSISLISNSCSPGDP 41
>SB_4159| Best HMM Match : Vpu (HMM E-Value=2)
Length = 779
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +1
Query: 1 VDPPGCRNSARG 36
VDPPGCRNS G
Sbjct: 103 VDPPGCRNSITG 114
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,082,399
Number of Sequences: 59808
Number of extensions: 378798
Number of successful extensions: 2415
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 2352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2413
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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