Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0543
         (636 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29189| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_25692| Best HMM Match : I-set (HMM E-Value=2e-20)                   27   9.7  
SB_10606| Best HMM Match : I-set (HMM E-Value=0)                       27   9.7  

>SB_29189| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 725

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 20/60 (33%), Positives = 28/60 (46%)
 Frame = -1

Query: 471 EEG*LARGAKSEKTLNIHAI*ITSAT*CSFITVNSVNNPTIKQSNAKPKNQYVHITYKRQ 292
           + G L R  K   T  I A+  +S T        S++ P     + KPKNQ +H  YK+Q
Sbjct: 253 QNGNLQRNLKHNPTKKIQALKRSSPT--------SLSYPQKDWLSKKPKNQDIHTRYKQQ 304


>SB_25692| Best HMM Match : I-set (HMM E-Value=2e-20)
          Length = 104

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = +2

Query: 209 SSDV-KLNCTYQLAFCVNNASSTLNIM 286
           SSD+ +  CT + AF  +NA+ST+N+M
Sbjct: 77  SSDIGRYTCTARNAFGKDNANSTVNVM 103


>SB_10606| Best HMM Match : I-set (HMM E-Value=0)
          Length = 872

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = +2

Query: 209 SSDV-KLNCTYQLAFCVNNASSTLNIM 286
           SSD+ +  CT + AF  +NA+ST+N+M
Sbjct: 735 SSDIGRYTCTARNAFGKDNANSTVNVM 761


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,321,337
Number of Sequences: 59808
Number of extensions: 315827
Number of successful extensions: 525
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)