Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0541
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual      147   1e-36
SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual          89   6e-19
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    28   1.1  
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|...    28   1.1  
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces...    26   4.4  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    26   5.8  

>SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score =  147 bits (356), Expect = 1e-36
 Identities = 84/197 (42%), Positives = 111/197 (56%), Gaps = 4/197 (2%)
 Frame = +1

Query: 103 KLIPELCNQFYHLGWVTGTGGGISIKQGDKIYIAPSGVQKERMKANDLFVQTIXXXXXXX 282
           +LI E+C   Y  GWVTGTG        D I IAPSGVQKERM+ + LFV ++       
Sbjct: 22  ELICEICRDLYTSGWVTGTG--------DAIVIAPSGVQKERMELHHLFVMSLITREYMR 73

Query: 283 XXXXXXXXXSQCTPLFMLAYR-MRNAGAVIHTHSPHAVRCTLLY--DKVFEITHQEMIKG 453
                    SQCTPLF+  Y  +R+A A IHTHS  A+  + L+     F  T  E++  
Sbjct: 74  MPALRLKP-SQCTPLFLAVYTSLRDAYACIHTHSQEAILLSTLFADSDHFSATGFEVLSY 132

Query: 454 I-KDTSLGRYLRYDEKLVVPIIENTPFEKDLAGSLEEALKEYPGTSAVLVRRHGVYVWGD 630
           I K +    + +  +K+ +P I NT  E DL  SL+EA+  YP T AV+VR HG+Y WGD
Sbjct: 133 IPKGSKNNGFHKPTDKIKIPFINNTAHESDLHDSLQEAINLYPDTCAVIVRDHGIYCWGD 192

Query: 631 TWQQAKTMTECYDYLFE 681
           TWQ  K  TE  ++LF+
Sbjct: 193 TWQDTKMNTEAVEFLFQ 209


>SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 89.0 bits (211), Expect = 6e-19
 Identities = 67/196 (34%), Positives = 97/196 (49%), Gaps = 2/196 (1%)
 Frame = +1

Query: 100 RKLIPELCNQFYHLGWVT-GTGGGISIKQGDKIYIAPSGVQKERMKANDLFVQTIXXXXX 276
           + LI EL   FY LGW+  G+G  I +K  D+       VQ++ +  ND+    +     
Sbjct: 7   KNLILELIPHFYSLGWMKFGSGYAICVK--DR-------VQRDFITENDIVTFNLSNQSV 57

Query: 277 XXXXXXXXXXXSQCTPLFMLAYRMRNAGAVIHTHSPHAVRCTLLYDKVFEITHQEMIKGI 456
                           +F       +A A I++ S  AV  ++ Y++ F    +EMIKGI
Sbjct: 58  TKDLVNWAY-------IFSWVLSNMDAVACIYSTSVAAVGASM-YNEKFTTQSKEMIKGI 109

Query: 457 -KDTSLGRYLRYDEKLVVPIIENTPFEKDLAGSLEEALKEYPGTSAVLVRRHGVYVWGDT 633
            K      YL   + L VPII N    K +   L++ ++ YP T AVL+R HGV  WG T
Sbjct: 110 PKGNPSAGYLCCFDTLEVPIIHNGD-SKTILDELKKVIELYPQTCAVLIRGHGVIGWGAT 168

Query: 634 WQQAKTMTECYDYLFE 681
           W+++KT  ECY+YLFE
Sbjct: 169 WEKSKTQMECYEYLFE 184


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = +1

Query: 409 YDKVFEITHQEMIKGIKDTSLGRYLRYDEKLVVPIIENTPFEKDLAGSLEEALKEYPGT 585
           YD + E+    +I  +++    R + Y +K +  +I N P + D A +L  A+ EY  T
Sbjct: 535 YDDIIEL--DPLIGSLENAR--RIVNYFKKNIPELIPNDPSDDDYAAALNYAVNEYVPT 589


>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 521

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -2

Query: 304 STFFPVVVILNLHH-QLFGQTDHWLSCVPSELLKVQCKFCLLV 179
           + F  V++ +NL H + FG+ + WLS V   +L      C+++
Sbjct: 164 AVFLVVILAINLLHVKYFGEVEFWLSAVKILVLVTLIITCIVI 206


>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 388 AVRCTLLYDKVFEITHQEMIKGIKDTSLGRYLR 486
           AVRC     K     H+E IKG+K+  L   LR
Sbjct: 193 AVRCIRFATKYDFNIHEETIKGLKNPELHERLR 225


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 298 FFPVVVILNLHHQLFGQTDHWLSC 227
           + P++V+ N H   F +TDH + C
Sbjct: 39  YVPLIVMKNAHDHGFLRTDHTIPC 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,716,941
Number of Sequences: 5004
Number of extensions: 55411
Number of successful extensions: 125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)