Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0541
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0330 - 16446685-16446776,16446968-16447119,16447172-164472...   188   4e-48
04_04_0940 - 29539138-29539626,29540125-29540531,29540631-295406...    30   1.5  
04_01_0419 + 5555264-5555808,5556582-5556903,5557011-5557271           30   1.5  
06_02_0338 - 14723277-14723444,14724564-14724836,14735044-147351...    28   6.0  
11_01_0623 - 4998236-4999606                                           28   7.9  
03_06_0701 - 35620559-35620777,35620872-35620949,35621038-356211...    28   7.9  
03_06_0546 - 34646946-34647289,34647542-34647608                       28   7.9  

>11_04_0330 -
           16446685-16446776,16446968-16447119,16447172-16447281,
           16447518-16447619,16447705-16447854,16448195-16448350,
           16448552-16448713,16449549-16449638,16450152-16450271,
           16451323-16451418,16451502-16451638,16453400-16453622
          Length = 529

 Score =  188 bits (458), Expect = 4e-48
 Identities = 101/208 (48%), Positives = 124/208 (59%), Gaps = 14/208 (6%)
 Frame = +1

Query: 100 RKLIPELCNQFYHLGWVTGTGGGISIKQGDK--------IYIAPSGVQKERMKANDLFVQ 255
           R+L+ ELC  FY  GWVTGTGG I++K  D         I ++PSGVQKERM A D++V 
Sbjct: 30  RELVAELCRHFYGQGWVTGTGGSITVKANDPALPLADQLIVMSPSGVQKERMVAEDMYVL 89

Query: 256 T----IXXXXXXXXXXXXXXXXSQCTPLFMLAYRMRNAGAVIHTHSPHAVRCTLLYD--K 417
           +    +                + C PLFM AY MR AGAVIH+H       T+L    K
Sbjct: 90  SADGKVLSSPVSKPWPNKPPKCTDCAPLFMKAYLMRGAGAVIHSHGMETCIATMLDPGAK 149

Query: 418 VFEITHQEMIKGIKDTSLGRYLRYDEKLVVPIIENTPFEKDLAGSLEEALKEYPGTSAVL 597
            F +TH EMIKGIK         Y ++LVVPIIENTP+E +L  SL EA+  YP  +AVL
Sbjct: 150 EFRMTHMEMIKGIKGHG------YRDELVVPIIENTPYEYELTDSLAEAIAAYPKATAVL 203

Query: 598 VRRHGVYVWGDTWQQAKTMTECYDYLFE 681
           VR HG+YVWGD+W  AKT  ECY YLF+
Sbjct: 204 VRNHGIYVWGDSWINAKTQAECYHYLFD 231


>04_04_0940 -
           29539138-29539626,29540125-29540531,29540631-29540662,
           29540809-29541086,29541164-29542515,29542616-29542874
          Length = 938

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 517 ENTPFEKDLAGSLEEALKEYPGTSAVLVRRHGVYVWGDTWQQAKTM 654
           ENT  +  L+    E LKE  G S  L+  +G+Y +   W  A  +
Sbjct: 286 ENTRRKSMLSSKWSELLKEDSGHSRFLLSTYGLYAYDTVWMLAHAL 331


>04_01_0419 + 5555264-5555808,5556582-5556903,5557011-5557271
          Length = 375

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -2

Query: 280 ILNLHHQLFGQTDHWLSCVPSELLKVQCKFCLLVLLIYHHPCQSPIL 140
           + NL + LF      L   PS L  ++C    ++L  Y+ PC  P L
Sbjct: 192 VKNLGNTLFELLSEGLGLKPSYLTDIECNQGQIILCHYYPPCPQPEL 238


>06_02_0338 -
           14723277-14723444,14724564-14724836,14735044-14735160,
           14735276-14735593
          Length = 291

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = -1

Query: 629 SPHTYTPCLLTSTALVPGYSFKASSRLPARSFSKGVFSIIGTTNFSS*RRYRPRDVSL 456
           +P + +    T+T  V G + +   R+  +   +G   + GTT+    RR  P+D +L
Sbjct: 47  APASSSDAKKTTTVFVAGSTGRTGKRVVEKLLERGFGVVAGTTDVGRARRSLPQDPNL 104


>11_01_0623 - 4998236-4999606
          Length = 456

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 402 CASDCVRRMCMYYSTCIAH 346
           CA D  RR+C YY   IAH
Sbjct: 13  CADDKKRRVCYYYDPGIAH 31


>03_06_0701 -
           35620559-35620777,35620872-35620949,35621038-35621191,
           35621279-35621391,35621487-35621586,35622193-35622389,
           35622470-35622526,35622630-35622734,35622824-35622931,
           35623651-35623848,35624022-35624024
          Length = 443

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 223 PSELLKVQCKFCLLVLLIYHHPCQSPILNGKID 125
           PS+ + V  K C  ++L  H P QS +LN  ++
Sbjct: 251 PSKWIPVLRKICWYLVLAPHDPMQSSLLNATLE 283


>03_06_0546 - 34646946-34647289,34647542-34647608
          Length = 136

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = -3

Query: 465 CVFDALNHFLMRDLKHLVIQQCASDCVRRMCMYYSTC 355
           C++       MRD  HL    C   CV  +C+  + C
Sbjct: 66  CLYSCCYRGKMRDSFHLPEDPCCDCCVHALCLQCALC 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,210,508
Number of Sequences: 37544
Number of extensions: 347297
Number of successful extensions: 865
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)