Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0541
(683 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23231| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 2e-08
SB_15471| Best HMM Match : E-MAP-115 (HMM E-Value=0.71) 48 7e-06
SB_7388| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_33036| Best HMM Match : Ion_trans_2 (HMM E-Value=3e-08) 31 0.66
SB_58879| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_37699| Best HMM Match : Peptidase_M13_N (HMM E-Value=0) 30 2.0
SB_17278| Best HMM Match : RVT_1 (HMM E-Value=0.0082) 29 3.5
SB_32446| Best HMM Match : RVT_1 (HMM E-Value=0.04) 29 4.6
SB_30049| Best HMM Match : FBA_2 (HMM E-Value=7) 29 4.6
SB_2746| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42) 29 4.6
SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27) 29 4.6
SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39) 29 4.6
SB_5114| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42) 29 4.6
SB_12744| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_10374| Best HMM Match : Fibrinogen_BP (HMM E-Value=2.2) 28 8.1
SB_6596| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_23231| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 60
Score = 56.8 bits (131), Expect = 2e-08
Identities = 25/54 (46%), Positives = 33/54 (61%)
Frame = +1
Query: 91 EHPRKLIPELCNQFYHLGWVTGTGGGISIKQGDKIYIAPSGVQKERMKANDLFV 252
EHPR LIP LC +FY+LGW TGTGG +IK KI I + +R + ++
Sbjct: 1 EHPRNLIPALCREFYNLGWFTGTGGAFTIKYRYKIGITKKRNRWKRRNRRNQYI 54
>SB_15471| Best HMM Match : E-MAP-115 (HMM E-Value=0.71)
Length = 245
Score = 48.0 bits (109), Expect = 7e-06
Identities = 19/25 (76%), Positives = 22/25 (88%)
Frame = +1
Query: 559 EALKEYPGTSAVLVRRHGVYVWGDT 633
EALK YP TSAV++RRHG+YVWG T
Sbjct: 25 EALKNYPETSAVIIRRHGLYVWGKT 49
>SB_7388| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 59
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Frame = +1
Query: 355 AGAVIHTHSPHAVRCTLLYDKV--FEITHQEMIKGIKDTSLGRYLRY 489
AGAVIH+HS +AV +LL + F ITHQ+MIKGI ++ Y +Y
Sbjct: 2 AGAVIHSHSKYAVMVSLLDQEATEFRITHQQMIKGIFNSKSHMYHKY 48
>SB_33036| Best HMM Match : Ion_trans_2 (HMM E-Value=3e-08)
Length = 298
Score = 31.5 bits (68), Expect = 0.66
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 516 YYWDY*FLIITEISA*GCVFDALNHFL-MRDLKHLVIQQCASDCVRRMCMYYSTCIAHSI 340
Y W +I+ ++ V A++ L RD+K L C + C+ ++C C HS+
Sbjct: 211 YIWVRIIVIMLGLTVTASVLTAISSCLEKRDVKALTCSGCPAGCLVKLCCPAGRCYGHSV 270
>SB_58879| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1786
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -2
Query: 238 WLSCVPSELLKVQCKFCLLVLLIYHHPCQSPILNGKIDCIIQELI 104
WL P L + C +LV +IYHHP S N ++ C IQ ++
Sbjct: 20 WLQIRPLRLPR--CISIILVGVIYHHPRASADDNRRLCCHIQSVV 62
>SB_37699| Best HMM Match : Peptidase_M13_N (HMM E-Value=0)
Length = 876
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +1
Query: 520 NTPFEKDLAGSLEEALKEYPGTSAVLVR 603
NT EK L G LEE + PG S L+R
Sbjct: 334 NTKVEKSLRGILEEGISAIPGASKKLMR 361
>SB_17278| Best HMM Match : RVT_1 (HMM E-Value=0.0082)
Length = 506
Score = 29.1 bits (62), Expect = 3.5
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 610 GVYVWGDTWQQAKTMTECY 666
GVY W WQ ++T+CY
Sbjct: 253 GVYKWSSAWQMEFSVTKCY 271
>SB_32446| Best HMM Match : RVT_1 (HMM E-Value=0.04)
Length = 197
Score = 28.7 bits (61), Expect = 4.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1
Query: 610 GVYVWGDTWQQAKTMTECY 666
GVY W WQ +T+CY
Sbjct: 147 GVYKWSSAWQMEFNVTKCY 165
>SB_30049| Best HMM Match : FBA_2 (HMM E-Value=7)
Length = 282
Score = 28.7 bits (61), Expect = 4.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1
Query: 610 GVYVWGDTWQQAKTMTECY 666
GVY W WQ +T+CY
Sbjct: 29 GVYKWSSAWQMEFNVTKCY 47
>SB_2746| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)
Length = 330
Score = 28.7 bits (61), Expect = 4.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1
Query: 610 GVYVWGDTWQQAKTMTECY 666
GVY W WQ +T+CY
Sbjct: 280 GVYKWSSAWQMEFNVTKCY 298
>SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2396
Score = 28.7 bits (61), Expect = 4.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1
Query: 610 GVYVWGDTWQQAKTMTECY 666
GVY W WQ +T+CY
Sbjct: 1818 GVYKWSSAWQMEFNVTKCY 1836
>SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)
Length = 1492
Score = 28.7 bits (61), Expect = 4.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1
Query: 610 GVYVWGDTWQQAKTMTECY 666
GVY W WQ +T+CY
Sbjct: 1239 GVYKWSSAWQMEFNVTKCY 1257
>SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39)
Length = 452
Score = 28.7 bits (61), Expect = 4.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1
Query: 610 GVYVWGDTWQQAKTMTECY 666
GVY W WQ +T+CY
Sbjct: 199 GVYKWSSAWQMEFNVTKCY 217
>SB_5114| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)
Length = 330
Score = 28.7 bits (61), Expect = 4.6
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +1
Query: 610 GVYVWGDTWQQAKTMTECY 666
GVY W WQ +T+CY
Sbjct: 280 GVYKWSSAWQMEFNVTKCY 298
>SB_12744| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 613
Score = 27.9 bits (59), Expect = 8.1
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Frame = +1
Query: 409 YDKVFEITHQEMIKGIKDTSLGRYLRYDEKLVV-------PIIENTPFEKDLAGSLEEAL 567
Y K FE+T+ IK + S L +D+ LV I + + K L+ E
Sbjct: 144 YRKGFEVTNCTTIKSRRSVSGLVTLIFDDLLVARKTPEGEKIADGKSYHKYLSSFFENLY 203
Query: 568 KEYPGTSAVLV 600
+EYPG A ++
Sbjct: 204 QEYPGIKAFVL 214
>SB_10374| Best HMM Match : Fibrinogen_BP (HMM E-Value=2.2)
Length = 707
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 100 RKLIPELCNQFYHLGWVTGTGGGISIKQGD 189
R LIP L Q +LG + GT GI ++GD
Sbjct: 33 RVLIPCLATQAKNLGLLHGTAHGIKAERGD 62
>SB_6596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 233
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 100 RKLIPELCNQFYHLGWVTGTGGGISIKQGD 189
R LIP L Q +LG + GT GI ++GD
Sbjct: 49 RVLIPCLATQAKNLGLLHGTAHGIKAERGD 78
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,399,661
Number of Sequences: 59808
Number of extensions: 411708
Number of successful extensions: 1098
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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