Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0541
         (683 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071553-1|AAL49175.1|  227|Drosophila melanogaster RE61993p pro...   290   1e-78
AE014298-1952|AAF48310.1|  227|Drosophila melanogaster CG11134-P...   290   1e-78

>AY071553-1|AAL49175.1|  227|Drosophila melanogaster RE61993p
           protein.
          Length = 227

 Score =  290 bits (712), Expect = 1e-78
 Identities = 136/201 (67%), Positives = 153/201 (76%), Gaps = 1/201 (0%)
 Frame = +1

Query: 79  EIDPEHPRKLIPELCNQFYHLGWVTGTGGGISIKQGDKIYIAPSGVQKERMKANDLFVQT 258
           ++  EHPR LIP LC QFYHLGWVTGTGGG+SIK  D+IYIAPSGVQKERM+  DLFVQ 
Sbjct: 8   DLPAEHPRHLIPSLCRQFYHLGWVTGTGGGMSIKYNDEIYIAPSGVQKERMQPEDLFVQD 67

Query: 259 IXXXXXXXXXXXXXXXXSQCTPLFMLAYRMRNAGAVIHTHSPHAVRCTLLYD-KVFEITH 435
           I                SQCTPLFMLAY+ R AGAVIHTHS HAV  TLL+  K F  TH
Sbjct: 68  ITGKDLQLPPEIKGLKKSQCTPLFMLAYQHRQAGAVIHTHSQHAVMATLLWPGKTFRCTH 127

Query: 436 QEMIKGIKDTSLGRYLRYDEKLVVPIIENTPFEKDLAGSLEEALKEYPGTSAVLVRRHGV 615
            EMIKG+ D +  RYLRYDE+LVVPIIENTPFE+DLA S+  A+ EYPG SA+LVRRHGV
Sbjct: 128 LEMIKGVYDEADKRYLRYDEELVVPIIENTPFERDLADSMYAAMMEYPGCSAILVRRHGV 187

Query: 616 YVWGDTWQQAKTMTECYDYLF 678
           YVWG  W++AKTM+ECYDYLF
Sbjct: 188 YVWGQNWEKAKTMSECYDYLF 208


>AE014298-1952|AAF48310.1|  227|Drosophila melanogaster CG11134-PA
           protein.
          Length = 227

 Score =  290 bits (712), Expect = 1e-78
 Identities = 136/201 (67%), Positives = 153/201 (76%), Gaps = 1/201 (0%)
 Frame = +1

Query: 79  EIDPEHPRKLIPELCNQFYHLGWVTGTGGGISIKQGDKIYIAPSGVQKERMKANDLFVQT 258
           ++  EHPR LIP LC QFYHLGWVTGTGGG+SIK  D+IYIAPSGVQKERM+  DLFVQ 
Sbjct: 8   DLPAEHPRHLIPSLCRQFYHLGWVTGTGGGMSIKYNDEIYIAPSGVQKERMQPEDLFVQD 67

Query: 259 IXXXXXXXXXXXXXXXXSQCTPLFMLAYRMRNAGAVIHTHSPHAVRCTLLYD-KVFEITH 435
           I                SQCTPLFMLAY+ R AGAVIHTHS HAV  TLL+  K F  TH
Sbjct: 68  ITGKDLQLPPEIKGLKKSQCTPLFMLAYQHRQAGAVIHTHSQHAVMATLLWPGKTFRCTH 127

Query: 436 QEMIKGIKDTSLGRYLRYDEKLVVPIIENTPFEKDLAGSLEEALKEYPGTSAVLVRRHGV 615
            EMIKG+ D +  RYLRYDE+LVVPIIENTPFE+DLA S+  A+ EYPG SA+LVRRHGV
Sbjct: 128 LEMIKGVYDEADKRYLRYDEELVVPIIENTPFERDLADSMYAAMMEYPGCSAILVRRHGV 187

Query: 616 YVWGDTWQQAKTMTECYDYLF 678
           YVWG  W++AKTM+ECYDYLF
Sbjct: 188 YVWGQNWEKAKTMSECYDYLF 208


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,340,587
Number of Sequences: 53049
Number of extensions: 608344
Number of successful extensions: 1493
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1489
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2992560750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)