Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0541
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49131-4|CAA88977.2|  263|Caenorhabditis elegans Hypothetical pr...   168   4e-42
Z49130-1|CAA88965.2|  708|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>Z49131-4|CAA88977.2|  263|Caenorhabditis elegans Hypothetical
           protein ZC373.5 protein.
          Length = 263

 Score =  168 bits (408), Expect = 4e-42
 Identities = 83/190 (43%), Positives = 109/190 (57%), Gaps = 1/190 (0%)
 Frame = +1

Query: 115 ELCNQFYHLGWVTGTGGGISIKQGDKIYIAPSGVQKERMKANDLFVQTIXXXXXXXXXXX 294
           EL  QFY LGW+ G+GG +    G ++ I+PS +QKER++  D+FV  +           
Sbjct: 35  ELMIQFYKLGWMRGSGGAMGCISGSELMISPSALQKERIREQDVFVYNMKDKTEVQRPPN 94

Query: 295 XXXXXSQCTPLFMLAYRMRNAGAVIHTHSPHAVRCT-LLYDKVFEITHQEMIKGIKDTSL 471
                S C+ LF L  +   +  VIHTHS  A   T L+   VFEI+HQE IKGI D   
Sbjct: 95  KRITVSSCSVLFSLIMKETGSECVIHTHSKCANLITQLIKSNVFEISHQEYIKGIYDPFS 154

Query: 472 GRYLRYDEKLVVPIIENTPFEKDLAGSLEEALKEYPGTSAVLVRRHGVYVWGDTWQQAKT 651
           G+ L+Y + L +PII+N P E  L   +   L+ YP   AVLVR HG++VWG TW+  K 
Sbjct: 155 GKALKYSDTLTIPIIDNMPSESQLLEPIRGVLENYPQAIAVLVRNHGLFVWGPTWESTKI 214

Query: 652 MTECYDYLFE 681
           MTEC DYL E
Sbjct: 215 MTECIDYLLE 224


>Z49130-1|CAA88965.2|  708|Caenorhabditis elegans Hypothetical
           protein T06D8.2 protein.
          Length = 708

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = -2

Query: 235 LSCVPSELLKVQCKFCLL--VLLIYHHPCQSPILNGKIDCIIQELIS 101
           +SC+ + LLK +  F +   VLL++HH C S + N  ++  IQ + S
Sbjct: 506 ISCLLAHLLK-EPLFTVYKDVLLLWHHFCTSRLPNMNLEKYIQRVAS 551


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,084,349
Number of Sequences: 27780
Number of extensions: 311355
Number of successful extensions: 748
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)