Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0541
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    24   1.2  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    24   1.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   6.3  

>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/42 (23%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +1

Query: 442 MIKGI-KDTSLGRYLRYDEKLVVPIIENTPFEKDLAGSLEEA 564
           +++GI +DT + +Y+ Y    ++P  +     +D+A +++ A
Sbjct: 16  VVRGIDQDTVVAKYMEYLMPDIMPCADELHISEDIATNIQAA 57


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/42 (23%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +1

Query: 442 MIKGI-KDTSLGRYLRYDEKLVVPIIENTPFEKDLAGSLEEA 564
           +++GI +DT + +Y+ Y    ++P  +     +D+A +++ A
Sbjct: 16  VVRGIDQDTVVAKYMEYLMPDIMPCADELHISEDIATNIQAA 57


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = +1

Query: 562 ALKEYPGTSAVLVRRHGVYVWGDTWQQAKTMTECYDYLFE 681
           A KE  G    L++     +  +TW+    +  C D L E
Sbjct: 251 AKKEIKGVPTYLIKWKNWDLKYNTWEPISNLINCSDILEE 290


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,733
Number of Sequences: 438
Number of extensions: 4114
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)