Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0540
         (404 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy...    44   7e-06
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy...    42   4e-05
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60...    26   2.6  
SPCC1682.05c |||signal recognition particle subunit |Schizosacch...    25   5.9  

>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 370

 Score = 44.4 bits (100), Expect = 7e-06
 Identities = 17/29 (58%), Positives = 22/29 (75%)
 Frame = +1

Query: 25  VCEALMQRCLAPNCATGGLGCDNMTVVIV 111
           +CE LM RC+A N  + G+GCDNMT+ IV
Sbjct: 261 ICENLMDRCIASNSESCGIGCDNMTICIV 289


>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 41.9 bits (94), Expect = 4e-05
 Identities = 19/39 (48%), Positives = 24/39 (61%)
 Frame = +1

Query: 1   LSGWEPAAVCEALMQRCLAPNCATGGLGCDNMTVVIVCL 117
           ++G     + E LM  C+A +  T GLGCDNMTV IV L
Sbjct: 250 VAGTSLEKIAENLMDNCIASDTETTGLGCDNMTVCIVAL 288


>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
           Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 582

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +3

Query: 39  NAAMFSAELRDGRPRLRQHDRGHCLSVAVPEGGATLSVSVLGHVATRDTCK 191
           ++A+F+ E+     + + H  G C SV V +    +      HV   D C+
Sbjct: 328 DSAVFNDEIDVSIEKAQPHHLGSCGSVTVTKEDTIIMKGAGDHVKVNDRCE 378


>SPCC1682.05c |||signal recognition particle subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 46  RCLAPNCATGGLGCDNMTVVIVCL 117
           R L  N     LGCDN++ V +CL
Sbjct: 17  RYLPNNFNDSRLGCDNLSTVGLCL 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,358,890
Number of Sequences: 5004
Number of extensions: 25122
Number of successful extensions: 44
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)