Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0540
(404 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0954 - 26281937-26282143,26282232-26282286,26282430-262824... 46 2e-05
09_06_0254 - 21872694-21872873,21872992-21873046,21873548-218736... 44 3e-05
02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,444... 44 3e-05
12_02_1077 - 25871439-25871453,25872805-25872867,25872976-25873977 29 1.8
10_08_0792 + 20607028-20607054,20608081-20608278,20608834-206090... 29 1.8
08_01_0312 + 2764744-2767390,2767632-2767990 28 3.2
10_08_0674 + 19788198-19789817 27 5.6
08_02_0875 + 22103903-22106293 27 5.6
09_02_0155 - 5066379-5068385 27 7.5
05_05_0127 - 22580720-22580808,22580936-22580987,22581703-225819... 27 7.5
05_04_0356 - 20584212-20584628,20584798-20584899,20585658-205857... 27 7.5
04_04_1687 - 35365766-35366356,35367137-35368135 27 7.5
03_06_0202 - 32327551-32327907,32328006-32328068,32328195-32329163 27 7.5
03_01_0310 + 2445870-2446242,2447976-2448079,2448396-2449865 27 7.5
02_02_0386 - 9599403-9599715,9599830-9600359 26 9.9
>06_03_0954 -
26281937-26282143,26282232-26282286,26282430-26282482,
26282587-26282663,26282734-26282857,26282947-26283072,
26283463-26283616,26283709-26283817,26283911-26283974,
26284782-26284898
Length = 361
Score = 45.6 bits (103), Expect = 2e-05
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +1
Query: 19 AAVCEALMQRCLAPNCATGGLGCDNMTVVIVCL-SPFPRGAPHCPYQYLDTSLHATPASY 195
+AVCE ++ RCLAP+ GG GCDNMT+++V P + P + T ++
Sbjct: 298 SAVCERVLDRCLAPS-TLGGEGCDNMTMILVQFKKPISQNKNVSPAEQSAADKQPTGDTH 356
Query: 196 WS 201
WS
Sbjct: 357 WS 358
>09_06_0254 -
21872694-21872873,21872992-21873046,21873548-21873600,
21873683-21873759,21873842-21873965,21874050-21874175,
21874861-21875011,21875112-21875220,21875791-21875854,
21876334-21876450
Length = 351
Score = 44.4 bits (100), Expect = 3e-05
Identities = 20/31 (64%), Positives = 24/31 (77%)
Frame = +1
Query: 19 AAVCEALMQRCLAPNCATGGLGCDNMTVVIV 111
+AVCE L+ CLAP +GG GCDNMTV+IV
Sbjct: 297 SAVCEKLLDHCLAP--VSGGDGCDNMTVIIV 325
>02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,
4441075-4441120,4442470-4442521,4442601-4442753,
4443338-4443457,4443549-4443714,4443822-4443934,
4444049-4444120,4444992-4445213,4445270-4445317,
4445639-4445697,4445809-4445887,4445982-4446119,
4446327-4446551,4446643-4447430,4447548-4447723,
4447911-4448169,4448646-4448707,4451055-4451212,
4451618-4451743,4452197-4452260,4452386-4452494,
4452607-4452760,4453055-4453178,4453257-4453333,
4453442-4453494,4453673-4453727,4453833-4454021
Length = 1379
Score = 44.4 bits (100), Expect = 3e-05
Identities = 19/31 (61%), Positives = 25/31 (80%)
Frame = +1
Query: 19 AAVCEALMQRCLAPNCATGGLGCDNMTVVIV 111
+AVCE ++ RCLAP+ GG GCDNMT+V+V
Sbjct: 1322 SAVCERVLDRCLAPS-TIGGEGCDNMTMVLV 1351
>12_02_1077 - 25871439-25871453,25872805-25872867,25872976-25873977
Length = 359
Score = 28.7 bits (61), Expect = 1.8
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +3
Query: 15 AGRGLRGVNAAMFSAELRDGRPRLRQHDRGHCLSVAVPEGG 137
AG G GV AAM + DGRPR D ++ ++ +GG
Sbjct: 108 AGAGAGGVLAAMLFLKGADGRPRYTAADALAFVAASLGKGG 148
>10_08_0792 +
20607028-20607054,20608081-20608278,20608834-20609039,
20610081-20610639
Length = 329
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 13 EPAAVCEALMQRCLAPNCATGGLGCDNMTVVIVCLSPFP 129
+P + L+Q L N CDN+TVV+VC S P
Sbjct: 266 DPERCSQELVQEALRRN------SCDNLTVVVVCFSSDP 298
>08_01_0312 + 2764744-2767390,2767632-2767990
Length = 1001
Score = 27.9 bits (59), Expect = 3.2
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +1
Query: 1 LSGWEPAAVCEALMQRCLAPN-CATGGLGCDNMTVVIV 111
L W AA A R LAP CA G+ CD T +V
Sbjct: 45 LRSWTYAAAASAGATRSLAPPWCAWPGVACDGATGEVV 82
>10_08_0674 + 19788198-19789817
Length = 539
Score = 27.1 bits (57), Expect = 5.6
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 25 VCEALMQRCLAPNCATGGLGCDNMTVVIVCLSPFP 129
+CEAL+ R L P C G G D + VV+ S P
Sbjct: 1 MCEALVDRQLLPPCGCNG-GGDVVVVVVPKTSAAP 34
>08_02_0875 + 22103903-22106293
Length = 796
Score = 27.1 bits (57), Expect = 5.6
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = +1
Query: 10 WEPAAVCEALMQRCLAPNCATGGLGCDNMTVVIVCLSPFPRGAPHC-PYQYLDTSL--HA 180
W PAA+ ALM + + G + D T V+ + F GA H P + +D L
Sbjct: 586 WSPAAIKSALMTTAYIKDNSNGTM-VDESTGVVADVFDF--GAGHVDPMRAMDPGLVYDI 642
Query: 181 TPASYWSF 204
TP Y +F
Sbjct: 643 TPVDYVNF 650
>09_02_0155 - 5066379-5068385
Length = 668
Score = 26.6 bits (56), Expect = 7.5
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +1
Query: 85 CDNMTVVIVCLSPFPRGAPHC--PYQYLDTSL 174
C + + +VCL PFP P+ QYLD L
Sbjct: 590 CLVLKLALVCLHPFPASRPNMRQVMQYLDKDL 621
>05_05_0127 -
22580720-22580808,22580936-22580987,22581703-22581908,
22582019-22582152,22582239-22582369,22583333-22583392,
22583615-22583755,22583880-22584347,22584524-22584686,
22585373-22585476,22585755-22585853,22586177-22586281,
22586516-22586596,22587168-22587986,22588497-22588553
Length = 902
Score = 26.6 bits (56), Expect = 7.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 184 VSRVATCPSTDTDNVAPPSGTATDRQ 107
V VAT P T +N +P T+T+R+
Sbjct: 412 VQNVATIPETSANNSSPSLSTSTNRR 437
>05_04_0356 -
20584212-20584628,20584798-20584899,20585658-20585705,
20586046-20586186,20586315-20586437,20587166-20587252,
20587630-20587742,20587844-20587943,20588217-20588601,
20588841-20588917,20589501-20589593,20589697-20589774,
20590923-20591246
Length = 695
Score = 26.6 bits (56), Expect = 7.5
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Frame = +3
Query: 12 GAGRGLRGVNAAMFSAELRDG-------RPRLRQHDRGHCLSVAVPEGGATLSVSVL 161
GAG G G +FS ELR G R L++ D G L P A +V+ L
Sbjct: 46 GAGAGASGGGRRVFSVELRPGETTIVSWRKMLKEADLGAALPPPPPAAAAQPAVAPL 102
>04_04_1687 - 35365766-35366356,35367137-35368135
Length = 529
Score = 26.6 bits (56), Expect = 7.5
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -1
Query: 137 APLGNGDRQTMTTVMLS-QPRPPVAQFGAKH 48
AP+ NGD + +++ QP+PP GA+H
Sbjct: 376 APVCNGDSLLVPPILMHPQPQPPADIQGARH 406
>03_06_0202 - 32327551-32327907,32328006-32328068,32328195-32329163
Length = 462
Score = 26.6 bits (56), Expect = 7.5
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +3
Query: 9 LGAGRGLRGVNAAMFSAELRDGRPRLRQHD 98
+ AG G GV AAM A DGRP D
Sbjct: 111 VAAGSGAGGVLAAMLVARGGDGRPMFSAED 140
>03_01_0310 + 2445870-2446242,2447976-2448079,2448396-2449865
Length = 648
Score = 26.6 bits (56), Expect = 7.5
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 198 ELHPVPAILLMIQLHE 245
ELHPVP + +I+LHE
Sbjct: 97 ELHPVPIVHRVIELHE 112
>02_02_0386 - 9599403-9599715,9599830-9600359
Length = 280
Score = 26.2 bits (55), Expect = 9.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 202 SSNSLQVSRVATCPSTDTDNVAPP 131
S+N+ + A PS+ TD+ APP
Sbjct: 27 SANATATTTTAMAPSSSTDDAAPP 50
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,787,481
Number of Sequences: 37544
Number of extensions: 201167
Number of successful extensions: 559
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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