Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0540
         (404 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39256| Best HMM Match : PAPA-1 (HMM E-Value=2.5)                    54   6e-08
SB_38403| Best HMM Match : PP2C (HMM E-Value=8.5e-35)                  43   1e-04
SB_33149| Best HMM Match : DSL (HMM E-Value=5.60519e-45)               32   0.15 
SB_58558| Best HMM Match : EGF (HMM E-Value=0)                         28   3.3  
SB_43963| Best HMM Match : Ammonium_transp (HMM E-Value=0)             28   3.3  
SB_31961| Best HMM Match : EGF (HMM E-Value=0)                         28   3.3  
SB_26174| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.3  
SB_48419| Best HMM Match : SH2 (HMM E-Value=4.6e-13)                   27   4.4  
SB_7963| Best HMM Match : Pyr_redox_dim (HMM E-Value=2.2e-39)          27   4.4  

>SB_39256| Best HMM Match : PAPA-1 (HMM E-Value=2.5)
          Length = 197

 Score = 53.6 bits (123), Expect = 6e-08
 Identities = 20/29 (68%), Positives = 25/29 (86%)
 Frame = +1

Query: 25  VCEALMQRCLAPNCATGGLGCDNMTVVIV 111
           +CE L+ RCLAP+C  GGLGCDNMTV+I+
Sbjct: 1   ICEELLTRCLAPDCQMGGLGCDNMTVIIL 29


>SB_38403| Best HMM Match : PP2C (HMM E-Value=8.5e-35)
          Length = 916

 Score = 42.7 bits (96), Expect = 1e-04
 Identities = 17/31 (54%), Positives = 22/31 (70%)
 Frame = +1

Query: 19  AAVCEALMQRCLAPNCATGGLGCDNMTVVIV 111
           +++CE L   CLAP+ +  G GCDNMT VIV
Sbjct: 395 SSICEKLFDACLAPDTSGDGAGCDNMTCVIV 425


>SB_33149| Best HMM Match : DSL (HMM E-Value=5.60519e-45)
          Length = 443

 Score = 32.3 bits (70), Expect = 0.15
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = +1

Query: 1   LSGWEPAAVCEALMQRCLAPNCATGGLGCDNMTVVIVCLSPFPRGAPHC 147
           L GW P   CE L   C+  N +T    CD+ T    CLS +    P C
Sbjct: 112 LPGWYPREQCETL---CIPHNDSTASYTCDSQTGSKTCLSGW--SGPEC 155


>SB_58558| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1101

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +1

Query: 28  CEALMQRCLAPNCATGGLGCDNMTVVIVCLSPFPRGAPHC 147
           C+  +  C+   C  GG  C ++    +CL P   G  +C
Sbjct: 385 CQINVNDCIPDPCQNGGFCCCDLVNDWICLCPGGWGGKNC 424


>SB_43963| Best HMM Match : Ammonium_transp (HMM E-Value=0)
          Length = 730

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 132 GGATLSVSVLGHVATRDTCKLLELHPVPAIL 224
           G A L+  +  H+ T DTC +  LH +P I+
Sbjct: 340 GYAYLTPFLTNHLKTHDTCGVNNLHGMPGII 370


>SB_31961| Best HMM Match : EGF (HMM E-Value=0)
          Length = 2813

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 28   CEALMQRCLAPNCATGGLGCDNMTVVIVCLSP 123
            CEA +  C +  C  GGL C +M     C  P
Sbjct: 1627 CEANIDECASSPCQNGGL-CTDMINAFTCTCP 1657


>SB_26174| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 885

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 25  VCEALMQRCLAPNCATGGLGCDNMTVVIVCL 117
           VC A++ + +    AT G+ CDN  VVI CL
Sbjct: 222 VCIAVLSKAIP---ATTGVLCDNARVVIACL 249


>SB_48419| Best HMM Match : SH2 (HMM E-Value=4.6e-13)
          Length = 274

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 241 CNCIIKRIAGTG*SSNSLQVSRVATCPS 158
           CN +IK+I  +  S+ SLQ+     CPS
Sbjct: 60  CNSLIKQIKSSSESNQSLQLFENILCPS 87


>SB_7963| Best HMM Match : Pyr_redox_dim (HMM E-Value=2.2e-39)
          Length = 387

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 82  GCDNMTVVIVCLSPFPRGAPHCPYQYLDTSLHATP 186
           G  NMT+ I+C+     GA H  Y  +   ++  P
Sbjct: 256 GSSNMTISIICVEGMNGGAVHIDYNCVPNVVYTHP 290


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,953,930
Number of Sequences: 59808
Number of extensions: 213544
Number of successful extensions: 574
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 727815563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)