Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0540
         (404 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46343-1|CAA86456.2|  356|Caenorhabditis elegans Hypothetical pr...    58   2e-09
U00051-14|AAM29692.1|  469|Caenorhabditis elegans Hypothetical p...    38   0.003
U00051-13|AAA91358.1|  491|Caenorhabditis elegans Hypothetical p...    38   0.003
Z46935-5|CAL36508.1|  709|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z46935-3|CAE48508.1|  794|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z46935-2|CAA87052.1|  792|Caenorhabditis elegans Hypothetical pr...    27   3.9  
AF100306-6|AAC68920.1|  427|Caenorhabditis elegans Hypothetical ...    27   3.9  
Z82261-5|CAH60756.1|  304|Caenorhabditis elegans Hypothetical pr...    27   6.8  

>Z46343-1|CAA86456.2|  356|Caenorhabditis elegans Hypothetical
           protein T23F11.1 protein.
          Length = 356

 Score = 58.4 bits (135), Expect = 2e-09
 Identities = 23/35 (65%), Positives = 29/35 (82%)
 Frame = +1

Query: 13  EPAAVCEALMQRCLAPNCATGGLGCDNMTVVIVCL 117
           +P ++CE L+ RCLAP+C  GGLGCDNMTVV+V L
Sbjct: 252 DPQSICEELLTRCLAPDCQMGGLGCDNMTVVLVGL 286


>U00051-14|AAM29692.1|  469|Caenorhabditis elegans Hypothetical
           protein F42G9.1b protein.
          Length = 469

 Score = 37.9 bits (84), Expect = 0.003
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = +1

Query: 19  AAVCEALMQRCLAPNCATGGLGCDNMTVV 105
           A VC+AL   CLA +    G GCDNMTV+
Sbjct: 432 AEVCDALCDACLADSTDGDGTGCDNMTVI 460


>U00051-13|AAA91358.1|  491|Caenorhabditis elegans Hypothetical
           protein F42G9.1a protein.
          Length = 491

 Score = 37.9 bits (84), Expect = 0.003
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = +1

Query: 19  AAVCEALMQRCLAPNCATGGLGCDNMTVV 105
           A VC+AL   CLA +    G GCDNMTV+
Sbjct: 454 AEVCDALCDACLADSTDGDGTGCDNMTVI 482


>Z46935-5|CAL36508.1|  709|Caenorhabditis elegans Hypothetical
           protein M106.4c protein.
          Length = 709

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 1   LSGWEPAAVCEALMQRCLAPNCAT 72
           +SG   +AVC AL++R L PN  T
Sbjct: 243 VSGGVDSAVCAALLRRALGPNRVT 266


>Z46935-3|CAE48508.1|  794|Caenorhabditis elegans Hypothetical
           protein M106.4b protein.
          Length = 794

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 1   LSGWEPAAVCEALMQRCLAPNCAT 72
           +SG   +AVC AL++R L PN  T
Sbjct: 328 VSGGVDSAVCAALLRRALGPNRVT 351


>Z46935-2|CAA87052.1|  792|Caenorhabditis elegans Hypothetical
           protein M106.4a protein.
          Length = 792

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 1   LSGWEPAAVCEALMQRCLAPNCAT 72
           +SG   +AVC AL++R L PN  T
Sbjct: 326 VSGGVDSAVCAALLRRALGPNRVT 349


>AF100306-6|AAC68920.1|  427|Caenorhabditis elegans Hypothetical
           protein T24C4.1 protein.
          Length = 427

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 111 LSVAVPEGGATLSVSVLGHVATRDTCKLLELHPV-PAIL 224
           + ++V    A  ++S+LGHVA +   K  EL  V P IL
Sbjct: 104 VQISVARDQAAYALSILGHVAAKPAFKPWELEDVTPTIL 142


>Z82261-5|CAH60756.1|  304|Caenorhabditis elegans Hypothetical
           protein C35D6.9a protein.
          Length = 304

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 331 QLNLGFHLGDFFYIKVHSTIILCLV*IFISCNCIIKRIAG 212
           Q  L F   + FY    +   LC+  IF +C  +++R +G
Sbjct: 46  QETLLFPAVNHFYQMTRNVFFLCIAMIFFACLSLLERFSG 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,940,128
Number of Sequences: 27780
Number of extensions: 157063
Number of successful extensions: 416
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)