Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0540
         (404 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    24   0.75 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   2.3  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   3.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   3.0  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   4.0  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   7.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.0  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    20   9.3  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.8 bits (49), Expect = 0.75
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 165 HVATRDTCKLLELHPVPAIL 224
           H+   DTC +  LH +P IL
Sbjct: 322 HLKIHDTCGVHNLHGMPGIL 341


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 178 RVATCPSTDTDNVAPPSGTATDRQ 107
           R+A+ PS+ T +  P  G A   Q
Sbjct: 516 RIASAPSSSTSSSPPAKGAAAAGQ 539


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 69  DGRPRLRQHDRGHCLSVAVPEGGATLSVS 155
           DG     ++DR    S+ VP+ GA++  S
Sbjct: 94  DGSQLAMRNDRSPSYSMQVPQQGASIDDS 122


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 69  DGRPRLRQHDRGHCLSVAVPEGGATLSVS 155
           DG     ++DR    S+ VP+ GA++  S
Sbjct: 542 DGSQLAMRNDRSPSYSMQVPQQGASIDDS 570


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 39  NAAMFSAELRDGRPRLRQH 95
           N+ MFS+ L D     RQH
Sbjct: 713 NSEMFSSLLSDTEQHFRQH 731


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 5/19 (26%), Positives = 13/19 (68%)
 Frame = +2

Query: 98  PWSLSVCRRSRGGRHIVRI 154
           P++  +C +S G  H++++
Sbjct: 231 PYTCDICGKSFGYNHVLKL 249


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +2

Query: 143  IVRISTWTRRYTRHLQAIGASPRPGDSLNDTI 238
            +  + T  R+YT +   + A  R GD +  T+
Sbjct: 1173 LTTVLTGLRKYTNYTIQVLAFTRVGDGVPTTV 1204


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +2

Query: 143  IVRISTWTRRYTRHLQAIGASPRPGDSLNDTI 238
            +  + T  R+YT +   + A  R GD +  T+
Sbjct: 1169 LTTVLTGLRKYTNYTIQVLAFTRVGDGVPTTV 1200


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 98  VMLSQPRPP 72
           V +SQPRPP
Sbjct: 103 VYISQPRPP 111



 Score = 20.2 bits (40), Expect = 9.3
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 98  VMLSQPRPP 72
           V +SQPRPP
Sbjct: 159 VYISQPRPP 167


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,527
Number of Sequences: 438
Number of extensions: 1847
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)