Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0540
         (404 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31860.1 68417.m04526 protein phosphatase 2C, putative / PP2C...    45   2e-05
At2g25070.1 68415.m02999 protein phosphatase 2C, putative / PP2C...    44   3e-05
At3g51470.1 68416.m05637 protein phosphatase 2C, putative / PP2C...    31   0.39 
At2g33700.1 68415.m04130 protein phosphatase 2C, putative / PP2C...    31   0.39 
At3g50420.1 68416.m05515 pentatricopeptide (PPR) repeat-containi...    29   1.2  
At3g60200.1 68416.m06726 expressed protein hypothetical proteins...    29   1.6  
At5g47010.1 68418.m05794 RNA helicase, putative similar to type ...    28   2.7  
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si...    27   3.6  
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar...    27   6.3  
At5g15680.1 68418.m01834 expressed protein                             26   8.3  
At1g67830.1 68414.m07742 GDSL-motif lipase/hydrolase family prot...    26   8.3  
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar...    26   8.3  

>At4g31860.1 68417.m04526 protein phosphatase 2C, putative / PP2C,
           putative protein phosphatase 2C, Schizosaccharomyces
           pombe, PIR2:S54297
          Length = 357

 Score = 45.2 bits (102), Expect = 2e-05
 Identities = 18/31 (58%), Positives = 25/31 (80%)
 Frame = +1

Query: 19  AAVCEALMQRCLAPNCATGGLGCDNMTVVIV 111
           + VCE ++ RCLAPN  +GG GCDNMT+++V
Sbjct: 298 SVVCEKVLDRCLAPN-TSGGEGCDNMTMILV 327


>At2g25070.1 68415.m02999 protein phosphatase 2C, putative / PP2C,
           putative
          Length = 355

 Score = 44.4 bits (100), Expect = 3e-05
 Identities = 18/31 (58%), Positives = 25/31 (80%)
 Frame = +1

Query: 19  AAVCEALMQRCLAPNCATGGLGCDNMTVVIV 111
           + VCE ++ RCLAP+ ATG  GCDNMT+++V
Sbjct: 298 STVCEKVVDRCLAPDTATGE-GCDNMTIILV 327


>At3g51470.1 68416.m05637 protein phosphatase 2C, putative / PP2C,
           putative protein phosphatase-2C, Mesembryanthemum
           crystallinum, EMBL:AF075580
          Length = 361

 Score = 30.7 bits (66), Expect = 0.39
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 13  EPAAVCEALMQRCLAPNCATGGLGCDNMTVVIVCLSP 123
           +P    +AL++  L  N       CDN+TVV+VC SP
Sbjct: 299 DPERCSQALVKEALQRN------SCDNLTVVVVCFSP 329


>At2g33700.1 68415.m04130 protein phosphatase 2C, putative / PP2C,
           putative contains PF00481: Protein phosphatase 2C
           domain; similar to protein phosphatase-2C (PP2C)
           (GI:3643085) [Mesembryanthemum crystallinum]
          Length = 380

 Score = 30.7 bits (66), Expect = 0.39
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +1

Query: 85  CDNMTVVIVCLSPFP 129
           CDN+TV++VC SP P
Sbjct: 334 CDNLTVIVVCFSPDP 348


>At3g50420.1 68416.m05515 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 794

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -1

Query: 248 YFVQLYH*ENRRDGVKLQ*LAGVACSDVSKY*YGQ 144
           +F+++Y  +NR DG  L  + G ACSD++    G+
Sbjct: 490 FFIEMYREKNRSDGFSLSSVIG-ACSDMAMLRQGE 523


>At3g60200.1 68416.m06726 expressed protein hypothetical proteins
           At2g44600 - Arabidopsis thaliana, EMBL:AAC27462
          Length = 305

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 76  GLGCDNMTVVIVCLSPFPRGAPHCPYQ 156
           G+G  +M+ +  CLSP  R +P+CP++
Sbjct: 232 GIG-KSMSGMAFCLSPLVRASPNCPFK 257


>At5g47010.1 68418.m05794 RNA helicase, putative similar to type 1 RNA
            helicase pNORF1 [Homo sapiens] GI:1885356
          Length = 1254

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = +1

Query: 58   PNCATGGLGCDNMTVVIVCLSPFPRGAPHCPY 153
            PN A  GL      +  V LSPFP G P  PY
Sbjct: 985  PNGARPGLHPAGYPIPRVPLSPFPGGPPSQPY 1016


>At1g24490.1 68414.m03084 60 kDa inner membrane family protein
           similar to chloroplast membrane protein (ALBINO3)
           (GI:3927828) [Arabidopsis thaliana]
          Length = 1013

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -2

Query: 355 SQSRHRSVQLNLGFHLGDFFYIKVHS-TIILCLV*IFISCNCIIKRIAGT 209
           S SR+R++   LGF    F +IK H+  ++  +    +S +   + +AGT
Sbjct: 553 SSSRYRTLVAQLGFRPDSFDFIKDHAENLLYTIADAAVSSSETFESVAGT 602


>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
           RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain
          Length = 845

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +2

Query: 119 RRSRGGRHIVRISTWTRRYTRHLQAIGASPRPGDSLNDTI 238
           R  +GG+ ++ I+ W R +   L+ +   P P   L+  +
Sbjct: 727 REGKGGKGLLLIAPWERYFLDELKDLPLEPIPAPDLDSRV 766


>At5g15680.1 68418.m01834 expressed protein 
          Length = 2151

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 10   WEPAAVCEALMQRCLAPNCATGG 78
            WE  +V EAL+Q C      TGG
Sbjct: 2033 WEALSVLEALLQSCSPVQGGTGG 2055


>At1g67830.1 68414.m07742 GDSL-motif lipase/hydrolase family protein
           similar to early nodulin ENOD8 [Medicago sativa]
           GI:304037, elicitor-induced glycoprotein iEP4 [Daucus
           carota] GI:1911765, lanatoside 15'-O-acetylesterase
           [Digitalis lanata] GI:3688284; contains Pfam profile
           PF00657: Lipase/Acylhydrolase with GDSL-like motif
          Length = 372

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 263 FSLDIYFVQLYH*ENRRDGVK 201
           FSLD+ FVQ Y+  NR   V+
Sbjct: 125 FSLDVQFVQFYNFHNRSQTVR 145


>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
           RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain
          Length = 798

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +2

Query: 119 RRSRGGRHIVRISTWTRRYTRHLQAIGASPRPGDSLNDTIARNK 250
           R  +GG  ++ I+ W R +   L+ +   P P   L D+I +++
Sbjct: 680 REGKGGEGLLLIAPWERYFLDELKDLPLEPIPAPDL-DSIVKHQ 722


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,385,120
Number of Sequences: 28952
Number of extensions: 140598
Number of successful extensions: 341
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)