Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0538
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    27   2.2  
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo...    27   2.9  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    26   3.8  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    26   5.0  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    25   6.6  
SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein |Schi...    25   8.8  

>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 17/71 (23%), Positives = 30/71 (42%)
 Frame = +1

Query: 136 SGIIHIRERQRTSRGPLASLPSMTWWIEYILFNTVKLLFVKVDLIKSCSIELHLKTNESR 315
           S I+ ++     S+G   +L    W   Y  F+T+  L     L K+ ++ +H+      
Sbjct: 537 SAIVCVQNLSHLSKGLKRTLDRYYWTTVYCGFSTIVTLIFAALLTKNTNLLIHISVARES 596

Query: 316 ICARHKKIVIR 348
           I A   + V R
Sbjct: 597 IEALAHECVTR 607


>SPBC29A3.11c |||mitochondrial carboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/49 (22%), Positives = 27/49 (55%)
 Frame = +1

Query: 181 PLASLPSMTWWIEYILFNTVKLLFVKVDLIKSCSIELHLKTNESRICAR 327
           PL+S+P    W+ + ++  + +  ++  LI SC+  L     E+++ ++
Sbjct: 253 PLSSIP----WLSFTIYRGIGISLMRSALINSCNFTLFELFRETKVLSK 297


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 130 SGSGIIHIRERQRTSRGPLASLPSMT 207
           +G G + +  R + SRGP  + P++T
Sbjct: 728 AGGGAVTVLTRDQMSRGPCVAFPNLT 753


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1562

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -3

Query: 390  VSMLLESLRRVLSHTDDDFFVACTDS*FICFQMQLDRTTFYKIN 259
            + ++ + LRR L  TD D FV   +  F+  + + +   F + N
Sbjct: 1504 IDIVAQMLRRTLRPTDTDIFVEMENDAFVRSRFEQESGEFLQAN 1547


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 269  IRSTFTNNNLTVLNRMYSIHQVIEGREASGPRD 171
            I STF+N  L +LNR+   +     +  SG +D
Sbjct: 1320 IESTFSNRFLKILNRIIKSYLAKSKQRKSGGKD 1352


>SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 522 KNVHIFIYMCVCTYIHCVCS 581
           K   + + + VC+YIH VC+
Sbjct: 2   KTTMLMLVLLVCSYIHYVCA 21


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,565,856
Number of Sequences: 5004
Number of extensions: 50659
Number of successful extensions: 98
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)