Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0538
         (617 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0107 - 13470054-13470126,13471723-13471851,13472000-134720...    30   1.7  
09_04_0575 - 18654887-18655047,18656182-18656242,18656777-18657250     27   9.0  

>07_03_0107 -
           13470054-13470126,13471723-13471851,13472000-13472086,
           13472480-13472524,13473121-13473240,13474010-13474086,
           13474319-13474407,13474620-13474693,13475177-13475243,
           13476427-13476478,13477272-13477307
          Length = 282

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +1

Query: 136 SGIIHIRERQRTSRGPLASLP-SMTWWIEYILFNTVKLLFVKVDLIKSCSIE 288
           SG +H  E   T    +++L  +  W++ YI+F  +KL    + +I++  +E
Sbjct: 196 SGSVHGNEISLTCESEVSNLRYTHPWYLRYIMFQALKLKVAFIQVIQTMDLE 247


>09_04_0575 - 18654887-18655047,18656182-18656242,18656777-18657250
          Length = 231

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 422 VKCTPHLK*WHCLMFILMRGWRNIDTQTKTVLIEKCTYF 538
           + CTP L  ++     + +    I T T TV+IE   YF
Sbjct: 139 INCTPELTGFYAKCGFVEKNVEKISTFTSTVVIELSVYF 177


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,536,686
Number of Sequences: 37544
Number of extensions: 289011
Number of successful extensions: 540
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)