Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0538
         (617 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57183| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-08)                 32   0.43 
SB_29775| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.99 
SB_47055| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  

>SB_57183| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-08)
          Length = 533

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +3

Query: 51  YLARIYDLLIAVICTLVLPVNYDTGFQRLWHYPYP*ATKNVTWTTSFSAFNDLV 212
           ++  I +L IA I  L+L V +D+G+     +PY  A   + W    +AF  +V
Sbjct: 59  FIRLIQNLAIADIALLLLAVPFDSGWWAPEDFPYGGAMCKIIWPLKTAAFQAIV 112


>SB_29775| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 547

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
 Frame = +1

Query: 118 IQDFSGSGIIHIRERQRTSRGPLASLPSMTWWIEYILFNTVKLLFVKVDLIKSC------ 279
           I+D  G+G+I ++      RGP  +     WW+ + + ++++ L  + +  ++C      
Sbjct: 111 IRDLGGAGVIALKP---VMRGPDINDDGSVWWVSHEMVDSLRSLLTEWEFSEACHPYTSG 167

Query: 280 SIELHLKTNESRI 318
            +  HL+ NE  I
Sbjct: 168 RVGQHLEQNEGWI 180


>SB_47055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 933

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 200 EGREASGPRDVLCRSRIWIMPEPLKSCIIV 111
           +G E  GPR   C + +W  P P+ +C+ V
Sbjct: 648 QGYELRGPRYTTCENTVWSQPAPV-ACVRV 676


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,878,258
Number of Sequences: 59808
Number of extensions: 366099
Number of successful extensions: 948
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)