Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0538
         (617 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68113-1|CAA92151.1|  321|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AF106575-5|AAC78171.1|  421|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF016446-8|AAC24168.2|  345|Caenorhabditis elegans Seven tm rece...    27   8.1  
AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z68113-1|CAA92151.1|  321|Caenorhabditis elegans Hypothetical
           protein E03G2.1 protein.
          Length = 321

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 527 CTYFHIYVCMYIYTLRVFI 583
           C Y +IY+ +Y+Y L +FI
Sbjct: 83  CAYIYIYIYIYVYGLYIFI 101


>AF106575-5|AAC78171.1|  421|Caenorhabditis elegans Hypothetical
           protein K04F1.12 protein.
          Length = 421

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -1

Query: 311 DSFVFKCNSIEQLFIRSTFTNNNLTVLNRMYSIHQVIEGRE 189
           +  V K NS+E +F   T  N NLT ++ +  +  ++  +E
Sbjct: 291 EEHVQKLNSVESIFGSLTIDNTNLTSIDFLSKLKNIVSLKE 331


>AF016446-8|AAC24168.2|  345|Caenorhabditis elegans Seven tm
           receptor protein 205 protein.
          Length = 345

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/29 (44%), Positives = 22/29 (75%)
 Frame = +3

Query: 42  LGIYLARIYDLLIAVICTLVLPVNYDTGF 128
           L IY++ I ++L A++  LVLP+ ++TGF
Sbjct: 45  LMIYIS-ILEVLYAIVDILVLPIFHNTGF 72


>AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical
            protein Y55F3BR.2 protein.
          Length = 1594

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 407  AQRGHKFLCCWNLLGGYCHTRMTIF 333
            +Q  HK+ CC N+ G  C +  +++
Sbjct: 949  SQSNHKYYCCGNIQGSMCPSGRSLY 973


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,236,992
Number of Sequences: 27780
Number of extensions: 291995
Number of successful extensions: 697
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)