Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0538
         (617 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   2.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   7.3  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   7.3  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 12/46 (26%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = +1

Query: 190 SLPSMTWWIEYILFNTVKLLFV-KVDLIKSCSIELHLKTNESRICA 324
           S+P+   W    L++   LL++ K+ L+ SC+++     ++++IC+
Sbjct: 106 SIPNHYLW----LYHDKTLLYMSKLTLVLSCAMKFESYPHDTQICS 147


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +2

Query: 311 HESVHATKKSSSVCDSTRLRDSNNIETCDHV 403
           +  VH T  SSS      L D    E+ D V
Sbjct: 408 NRKVHHTTSSSSAAGGEGLADRRGSESSDSV 438


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 250 FVKVDLIKSCSIELHLKTNESRI 318
           FV    + SCS +    TNE RI
Sbjct: 188 FVPEGFLTSCSFDYLTDTNEIRI 210


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,141
Number of Sequences: 438
Number of extensions: 3567
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)