Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0537
         (599 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0102 - 18131640-18131655,18132928-18133046,18133186-181333...    91   5e-19
07_03_0242 + 15700336-15700401,15700481-15700649,15701828-15702024     70   1e-12
06_01_0367 - 2636487-2636498,2636655-2636724,2636831-2636937,263...    70   2e-12
01_06_0085 + 26289952-26290333,26290439-26290551,26291284-26291865     30   1.2  
02_05_0042 + 25351648-25351724,25351983-25352010,25352311-253523...    28   6.6  
11_08_0060 + 28108548-28109402                                         27   8.7  

>01_05_0102 -
           18131640-18131655,18132928-18133046,18133186-18133300,
           18134072-18134325
          Length = 167

 Score = 91.5 bits (217), Expect = 5e-19
 Identities = 53/129 (41%), Positives = 78/129 (60%), Gaps = 13/129 (10%)
 Frame = +2

Query: 191 LYIFDRYGTLLYYGEWNRSKQSGMSIEEEGKLMYGMLFSIKSFVSKISP----------- 337
           LY+F+R G  L Y EW+R  ++ +   ++ KLM+G+LFS++SF +KI P           
Sbjct: 36  LYVFNRGGVCLLYREWHRPLRT-LDPTQDQKLMFGLLFSLRSFTAKIDPTTAEKGNLGVP 94

Query: 338 LDPKDGFSHY--KTSKYTLHCLETPSGLKFVMNTDNQAQGVRDLLKKIYAEIYVKYMIRN 511
           L P  G S Y  KT+ Y L+ LE+PSG+K ++ T  +    RD LK IY  +YV+Y+++N
Sbjct: 95  LLPGQGCSFYSFKTNTYKLNFLESPSGIKLILITHPRTGDQRDTLKHIY-NLYVEYVVKN 153

Query: 512 PLCEMGEPI 538
           PL   G PI
Sbjct: 154 PLYAPGTPI 162


>07_03_0242 + 15700336-15700401,15700481-15700649,15701828-15702024
          Length = 143

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 38/134 (28%), Positives = 70/134 (52%)
 Frame = +2

Query: 182 IYNLYIFDRYGTLLYYGEWNRSKQSGMSIEEEGKLMYGMLFSIKSFVSKISPLDPKDGFS 361
           IY+L+I ++ G L+YY ++     +G +   +   +  +  S+ +   ++SP    +G  
Sbjct: 6   IYSLFIINKSGGLIYYKDYG---SAGRTDTNDSLRLASLWHSMHAISQQLSPTPGCEGID 62

Query: 362 HYKTSKYTLHCLETPSGLKFVMNTDNQAQGVRDLLKKIYAEIYVKYMIRNPLCEMGEPIV 541
             +   + LHC ++ +G KF    +  AQ +  LLK IY E+Y  ++++NP  EM  PI 
Sbjct: 63  LLQAHNFDLHCFQSLTGTKFFAVCETGAQNIETLLKVIY-ELYTDFVLKNPFYEMEMPIR 121

Query: 542 SDLFKSKLDLFIKQ 583
            +LF   L   I++
Sbjct: 122 CELFDLNLAQVIQK 135


>06_01_0367 -
           2636487-2636498,2636655-2636724,2636831-2636937,
           2637208-2637226,2637383-2637470,2638175-2638303,
           2638428-2638506,2639658-2639720,2640437-2640535,
           2641583-2641740,2642926-2643094,2643174-2643239
          Length = 352

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 37/128 (28%), Positives = 67/128 (52%)
 Frame = +2

Query: 182 IYNLYIFDRYGTLLYYGEWNRSKQSGMSIEEEGKLMYGMLFSIKSFVSKISPLDPKDGFS 361
           IY+L+I ++ G L+YY ++     +G +   +   +  +  S+ +   ++SP    +G  
Sbjct: 6   IYSLFIINKSGGLIYYKDYG---SAGRTDTNDSLRLASLWHSMHAISQQLSPTHGCEGID 62

Query: 362 HYKTSKYTLHCLETPSGLKFVMNTDNQAQGVRDLLKKIYAEIYVKYMIRNPLCEMGEPIV 541
             +   + LHC ++ +G KF    +  AQ +  LLK IY E+Y  ++++NP  EM  PI 
Sbjct: 63  LLQAHNFDLHCFQSLTGTKFFAVCETGAQNIETLLKVIY-ELYTDFVLKNPFYEMEMPIR 121

Query: 542 SDLFKSKL 565
            +LF   L
Sbjct: 122 CELFDLNL 129


>01_06_0085 + 26289952-26290333,26290439-26290551,26291284-26291865
          Length = 358

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +2

Query: 203 DRYGTLLYYGEWNRSKQSGMSIEEEGKLMYGMLFSIKSFVSKISPLDP 346
           D    ++ YGE +++  +G++ E   +     LFS K F+S++   +P
Sbjct: 33  DLRNNIINYGELSQAAYTGLNRERRSRYAGSCLFSRKDFLSRVDVSNP 80


>02_05_0042 +
           25351648-25351724,25351983-25352010,25352311-25352373,
           25352880-25352945,25353029-25353076,25353338-25353379,
           25353499-25353714,25354066-25354188,25354352-25354564,
           25354930-25355016,25355259-25355507,25356386-25356507,
           25357135-25357225,25358467-25358882,25359489-25359609
          Length = 653

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/59 (27%), Positives = 31/59 (52%)
 Frame = +2

Query: 194 YIFDRYGTLLYYGEWNRSKQSGMSIEEEGKLMYGMLFSIKSFVSKISPLDPKDGFSHYK 370
           ++ D +GTL YYG  N+ +  G + ++      G +FS   F+++ +P    +  S +K
Sbjct: 204 FVLDSHGTLFYYG--NKGQSQGAASQQTAGEGTG-VFSRFRFLNQKAPTQGDNALSCHK 259


>11_08_0060 + 28108548-28109402
          Length = 284

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 253 VWNVYRGGRQINVRNAFLDKIIRFKDF 333
           +WN Y GGR+  V   F D ++   DF
Sbjct: 125 LWNAYLGGRRAGVPRPFGDAVVDGIDF 151


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,733,184
Number of Sequences: 37544
Number of extensions: 261548
Number of successful extensions: 573
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)