Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0537
         (599 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5271| Best HMM Match : No HMM Matches (HMM E-Value=.)               63   2e-10
SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.94 
SB_19455| Best HMM Match : Amino_oxidase (HMM E-Value=0.0003)          29   3.8  
SB_12202| Best HMM Match : SRCR (HMM E-Value=4.8e-34)                  29   3.8  
SB_38609| Best HMM Match : NAD_binding_5 (HMM E-Value=0)               29   3.8  
SB_19200| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_15962| Best HMM Match : DUF528 (HMM E-Value=0.083)                  28   5.0  
SB_1836| Best HMM Match : zf-C2H2 (HMM E-Value=0.0016)                 28   6.6  
SB_51895| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  

>SB_5271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 216

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 31/100 (31%), Positives = 53/100 (53%)
 Frame = +2

Query: 284 LMYGMLFSIKSFVSKISPLDPKDGFSHYKTSKYTLHCLETPSGLKFVMNTDNQAQGVRDL 463
           ++  M   + +  +K+SP     G    +   + LHC ++ +GLKF++ TD +  G+  L
Sbjct: 103 MLASMFHPLFAIAAKLSPEQRSSGIEVLEADSFKLHCFQSMTGLKFIVLTDPRQVGMDGL 162

Query: 464 LKKIYAEIYVKYMIRNPLCEMGEPIVSDLFKSKLDLFIKQ 583
           LKKIY E+Y  + ++NP   +  PI  +LF   L   + Q
Sbjct: 163 LKKIY-ELYGDFALKNPFYSLDMPIRCELFDLNLQKALDQ 201


>SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6500

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
 Frame = +2

Query: 341  DPKDGFSHYKT------SKYTLHCLETPSGLKFVMNTDNQAQGVRDLLKKIY-AEIYVKY 499
            + ++ F+H K+      SKYTLH +      KF + T      V + +K IY  E  ++ 
Sbjct: 1707 ESEENFNHMKSVVNAVISKYTLHWI------KFGLITFGSKVTVWENMKGIYPTEAVLRK 1760

Query: 500  MIRNPLCEMGEPIVSDLFKSKLDLFIKQTP 589
             + N     G P +  +  S   LF  QTP
Sbjct: 1761 FVNNMPKPSGRPAIDKVLTSAAKLFKSQTP 1790


>SB_19455| Best HMM Match : Amino_oxidase (HMM E-Value=0.0003)
          Length = 658

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +2

Query: 188 NLYIFDRYGTLLYYGEWNRSKQSGMSIEEEGKL-MYGMLFSIKS-FVSKISPLDPK 349
           N  +  R GT  YYG   R +Q   S +E G + M G L S+K  ++ K   +D K
Sbjct: 151 NFDVQSRGGTFTYYGLAER-RQKESSFKEWGTVNMRGFLLSVKDYYLEKCEKVDKK 205


>SB_12202| Best HMM Match : SRCR (HMM E-Value=4.8e-34)
          Length = 560

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = -1

Query: 521 HITDFLSYI*HKFQHKSFLGDLGRPVLGCLYSSQTSALRVSPG 393
           +++DF+ Y+ + F HK+F  D GR +    +SS    + V+ G
Sbjct: 43  YVSDFVVYVNNAFFHKTFRADTGR-INSSPFSSIPLTVNVTSG 84


>SB_38609| Best HMM Match : NAD_binding_5 (HMM E-Value=0)
          Length = 603

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +2

Query: 413 LKFVMNTDNQAQGVRDLLKKIYAEIYVKYMIRNPLCEMGEPIVSDLFKSK 562
           +KF +N + + Q    +L        + Y+++ PL   G P+V+ LFK +
Sbjct: 513 IKFKVNDEEEFQNFNSVLS------ILSYLLKAPLVPSGAPVVNALFKQR 556


>SB_19200| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 852

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +2

Query: 413 LKFVMNTDNQAQGVRDLLKKIYAEIYVKYMIRNPLCEMGEPIVSDLFKSK 562
           +KF +N + + Q    +L        + Y+++ PL   G P+V+ LFK +
Sbjct: 379 IKFKVNDEEEFQNFNSVLS------ILSYLLKAPLVPSGAPVVNALFKQR 422


>SB_15962| Best HMM Match : DUF528 (HMM E-Value=0.083)
          Length = 1466

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 536 WVHPFHITDFLSYI*HKFQHKSFLGDLGRPVL 441
           W +PFH   FLS I   F H     D+ +P L
Sbjct: 306 WYYPFHYAPFLSDI-KDFSHYELKFDMSKPFL 336


>SB_1836| Best HMM Match : zf-C2H2 (HMM E-Value=0.0016)
          Length = 413

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 333 EIFETND-FIEKSIPYINLPSSSIDIPDCFERF 238
           E FET+D ++E    Y NLP   ++ P C ERF
Sbjct: 235 EFFETSDDYLEHY--YSNLPLPCLEEPSCNERF 265


>SB_51895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1368

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = -1

Query: 254 TVLNDSTHHNTIKYHIDRICINCKLSFFILSLEYTVSRTKKITNFHKINIPDYKN 90
           ++L+    +NT+KY      I   L   ++S+++ VSR  KI +  +  I + KN
Sbjct: 672 SMLSYEDTYNTLKYADRAKSIKVSLKRNVVSVDFHVSRYAKIVDELRTEITELKN 726


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,972,807
Number of Sequences: 59808
Number of extensions: 339858
Number of successful extensions: 848
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)