Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0537
(599 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g51160.1 68414.m05752 synbindin, putative similar to Swiss-Pr... 102 2e-22
At5g02280.1 68418.m00151 synbindin, putative similar to Swiss-Pr... 60 1e-09
At1g74190.1 68414.m08592 leucine-rich repeat family protein cont... 30 1.3
At2g37360.1 68415.m04582 ABC transporter family protein 27 7.2
At2g30150.1 68415.m03669 UDP-glucoronosyl/UDP-glucosyl transfera... 27 7.2
At1g19650.1 68414.m02449 SEC14 cytosolic factor, putative / phos... 27 7.2
At1g17910.1 68414.m02217 wall-associated kinase, putative contai... 27 7.2
At5g58050.1 68418.m07265 glycerophosphoryl diester phosphodieste... 27 9.5
At4g32700.1 68417.m04655 DNA-directed DNA polymerase family prot... 27 9.5
At3g50400.1 68416.m05513 GDSL-motif lipase/hydrolase family prot... 27 9.5
>At1g51160.1 68414.m05752 synbindin, putative similar to
Swiss-Prot:Q9ES56 synbindin (TRS23 homolog) [Mus
musculus]
Length = 169
Score = 102 bits (245), Expect = 2e-22
Identities = 51/143 (35%), Positives = 89/143 (62%), Gaps = 13/143 (9%)
Frame = +2
Query: 191 LYIFDRYGTLLYYGEWNRSKQSGMSIEEEGKLMYGMLFSIKSFVSKISPLDPKDG----- 355
+Y+F+R G L Y EWNR + ++ +++ KLM+G+LFS+KS +K+ P++ G
Sbjct: 26 MYVFNRNGVCLLYKEWNRPLHT-LNPQQDHKLMFGLLFSLKSLTAKMDPVNADKGNLGVP 84
Query: 356 --------FSHYKTSKYTLHCLETPSGLKFVMNTDNQAQGVRDLLKKIYAEIYVKYMIRN 511
F ++T+ Y L +ETPSG+K ++ T + +R+ LK IY+ +YV+Y+++N
Sbjct: 85 QLPGQGCSFHSFRTNTYKLSFMETPSGIKIILVTHPKTGDLRESLKYIYS-LYVEYVVKN 143
Query: 512 PLCEMGEPIVSDLFKSKLDLFIK 580
P+ G PI S+LF + LD +++
Sbjct: 144 PIYSPGSPIKSELFNTALDQYVR 166
>At5g02280.1 68418.m00151 synbindin, putative similar to
Swiss-Prot:Q9ES56 synbindin (TRS23 homolog) [Mus
musculus]
Length = 141
Score = 59.7 bits (138), Expect = 1e-09
Identities = 34/128 (26%), Positives = 63/128 (49%)
Frame = +2
Query: 182 IYNLYIFDRYGTLLYYGEWNRSKQSGMSIEEEGKLMYGMLFSIKSFVSKISPLDPKDGFS 361
IY+LYI ++ G L++Y + G + + + S+ + ++SP++ G
Sbjct: 4 IYSLYIINKSGGLIFYKDCGTK---GRMDTNDSLRVASLWHSMHAISQQLSPVNGCSGIE 60
Query: 362 HYKTSKYTLHCLETPSGLKFVMNTDNQAQGVRDLLKKIYAEIYVKYMIRNPLCEMGEPIV 541
+ + LHC ++ G KF + + + LL+ IY E+Y Y+++NP E+ PI
Sbjct: 61 LLEADTFDLHCFQSLPGTKFFVVCEPGTPHMESLLRYIY-ELYTDYVLKNPFYEIEMPIR 119
Query: 542 SDLFKSKL 565
+LF L
Sbjct: 120 CELFDINL 127
>At1g74190.1 68414.m08592 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Cf-2.1
[Lycopersicon pimpinellifolium] gi|1184075|gb|AAC15779
Length = 965
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/63 (28%), Positives = 34/63 (53%)
Frame = +2
Query: 263 SIEEEGKLMYGMLFSIKSFVSKISPLDPKDGFSHYKTSKYTLHCLETPSGLKFVMNTDNQ 442
S+E +GK +LFSI+S + +++ + D S K + CL + +GL+ + + N+
Sbjct: 221 SMELQGKFCTDLLFSIQSGICELNNMQELD-LSQNKLVGHLPSCLTSLTGLRVLDLSSNK 279
Query: 443 AQG 451
G
Sbjct: 280 LTG 282
>At2g37360.1 68415.m04582 ABC transporter family protein
Length = 755
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Frame = -1
Query: 170 ILSLEYTVSRTKKITNFHK----INIPDYKNNN 84
I LEY+ TK + FHK P Y NNN
Sbjct: 370 IRELEYSTEGTKPLVEFHKQWRAKQAPSYNNNN 402
>At2g30150.1 68415.m03669 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 440
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +2
Query: 401 TPSGLKFVMNTDNQAQGVRDLLKKIYAEIY-VKYMIRNPLCEMGEPIVSDLFKSKLDLFI 577
+P+ L + + V ++ KK + E+Y KY++ E+ EP D F SK D +
Sbjct: 163 SPTRLSDLQILHGYSHQVFNIFKKSFGELYKAKYLLFPSAYEL-EPKAIDFFTSKFDFPV 221
Query: 578 KQT 586
T
Sbjct: 222 YST 224
>At1g19650.1 68414.m02449 SEC14 cytosolic factor, putative /
phosphoglyceride transfer protein, putative similar to
SP:P24859 from [Kluyveromyces lactissimilar to
phosphatidylinositol transfer-like protein IV
(GI:14486707) [Lotus japonicus]; contains Pfam PF00650 :
CRAL/TRIO domain; contains Pfam PF03765 : CRAL/TRIO,
N-terminus
Length = 608
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 376 KIHPSLPGDTLRAEVCDEYRQPSTGRPRSPKK 471
K H L ++RAE+CDE R RP SP +
Sbjct: 487 KEHSQLHSSSVRAELCDE-RIARESRPPSPPR 517
>At1g17910.1 68414.m02217 wall-associated kinase, putative contains
similarity to wall-associated kinase 4 GI:3355308 from
[Arabidopsis thaliana]
Length = 764
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -1
Query: 254 TVLNDSTHHNTIKYHIDRICINCKLSFFIL 165
T +N S H I YHI + + FF+L
Sbjct: 362 TCINTSGGHRCIDYHIPEVMLGLGAGFFVL 391
>At5g58050.1 68418.m07265 glycerophosphoryl diester
phosphodiesterase family protein contains Pfam PF03009 :
Glycerophosphoryl diester phosphodiesterase family;
similar to Glycerophosphoryl diester phosphodiesterase
precursor (Glycerophosphodiester phosphodiesterase)
(Surface-exposed lipoprotein D) (Protein D)
(ImmunoglobulinD-binding protein) (IGD-binding protein)
(SP:Q06282) {Haemophilus influenzae}
Length = 753
Score = 27.1 bits (57), Expect = 9.5
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Frame = -1
Query: 221 IKYHIDRICINCKLSFFILSLEYTVSRTKKITNFHKINIPDY----KNNNINI-FDLMND 57
IK H D + + + S +S + +T + HK NI Y +N I I FD +D
Sbjct: 567 IKKHADAVNL-LRTSLITVSQSFATGKTNVVEEMHKANISVYVSVLRNEYIAIAFDYFSD 625
Query: 56 SYFTFCYFI 30
FI
Sbjct: 626 PTIELATFI 634
>At4g32700.1 68417.m04655 DNA-directed DNA polymerase family protein
similar to DNA helicase HEL308 [Homo sapiens]
GI:19110782; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00476: DNA polymerase family A
Length = 1548
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 591 IGVCLINKSNLLLNRSLTMGSPISHNGFLII 499
+ VC I K+N L+NR L G +S G ++I
Sbjct: 58 VAVCTIEKANSLINRLLEEGR-LSELGIIVI 87
>At3g50400.1 68416.m05513 GDSL-motif lipase/hydrolase family protein
similar to family II lipase EXL3 (GI:15054386), EXL1
(GI:15054382), EXL2 (GI:15054384) [Arabidopsis
thaliana]; contains Pfam profile PF00657:
Lipase/Acylhydrolase with GDSL-like motif
Length = 374
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 286 NVRNAFLDKIIRFKDFTFRS 345
NV + F+D I+ FKD+ FR+
Sbjct: 285 NVYDLFMDLIVNFKDYGFRT 304
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,046,750
Number of Sequences: 28952
Number of extensions: 243674
Number of successful extensions: 580
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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