Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0536
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    27   3.3  
SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|c...    26   4.3  
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    25   7.5  
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    25   9.9  

>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/40 (32%), Positives = 16/40 (40%)
 Frame = +3

Query: 30  PTPKRTKILPYIWNPSREPNPTALVIDSRITTAPMWNEQS 149
           PTPK+   LP  W   R  N   L   S    + + N  S
Sbjct: 670 PTPKKAASLPQFWLSPRSHNTARLASISSFAKSAVMNSTS 709


>SPBC146.12 |coq6||monooxygenase Coq6|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 466

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +2

Query: 50  NSALHMEPQPGAEPYRF 100
           NS++H++ +PG+EP  F
Sbjct: 116 NSSIHLDQKPGSEPMAF 132


>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 404 SDINEMTLQTSGHDIDSHLVRPKHQYV 324
           +DI EM  + SG+ ++ HLVR +  Y+
Sbjct: 79  ADIREMC-KISGYYVEDHLVRTEDDYI 104


>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = +3

Query: 498 TDLFDDILRFLCFKI*SSDSQITDLFTKRHEYESHLL*TSSNSKCSFSR 644
           TD+      F  F    S ++I D     HEYE H    S   +C+F R
Sbjct: 129 TDMCQHSPYFKSFPFEESKNKILDSI---HEYEKHYTPLSEAEECTFVR 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,598,166
Number of Sequences: 5004
Number of extensions: 50908
Number of successful extensions: 133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)