Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0536
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0148 - 1051121-1051192,1051378-1051512,1052343-1052396,105...    29   3.4  
03_05_0173 + 21502765-21504216                                         28   5.9  

>02_01_0148 -
           1051121-1051192,1051378-1051512,1052343-1052396,
           1052501-1052581,1052667-1052826,1053346-1053453,
           1053543-1053718,1053952-1054002,1054154-1054264,
           1054493-1054547,1055667-1055789,1055922-1056007,
           1056235-1056349,1056429-1056667
          Length = 521

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
 Frame = -3

Query: 401 DINEMTLQTSGHDIDS--HLV-RPKHQYVFSSTNNSEF*VLMTC 279
           + +E  L++S +D DS  HL+ RP H+  F++T+  +    +TC
Sbjct: 166 EASEANLRSSNNDEDSSVHLISRPMHEITFATTDKPKVLSQLTC 209


>03_05_0173 + 21502765-21504216
          Length = 483

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 112 PASPPRRCGTNNPSNYGMKHTENTGKEIMVSKIFVP 219
           P SPP  CG   P N G   T+   +++M +    P
Sbjct: 272 PLSPPPPCGMAKPPNSGDPLTDQNNQQLMANTHSAP 307


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,409,587
Number of Sequences: 37544
Number of extensions: 290764
Number of successful extensions: 703
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)