Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0536
         (673 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23484| Best HMM Match : COesterase (HMM E-Value=0)                  34   0.091
SB_38136| Best HMM Match : COesterase (HMM E-Value=0)                  33   0.16 
SB_5836| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.84 
SB_56402| Best HMM Match : Extensin_2 (HMM E-Value=1.1)                29   3.4  
SB_9981| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_3431| Best HMM Match : EGF (HMM E-Value=1.8e-08)                    29   4.5  
SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0)                      28   6.0  
SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_28537| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_23484| Best HMM Match : COesterase (HMM E-Value=0)
          Length = 586

 Score = 34.3 bits (75), Expect = 0.091
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +3

Query: 9   NFARYGNPTPKRTKILPYIWNPSREPNPTALVIDSRITTAPMWNEQSVKLWNETY 173
           NFA+YGNPTP  + +    W      N   L I   +  A  ++   +  WNE +
Sbjct: 489 NFAKYGNPTP--SPVHGTNWERFNTSNKAYLKIQPNVVLASKFHPARMAFWNEYF 541


>SB_38136| Best HMM Match : COesterase (HMM E-Value=0)
          Length = 590

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +3

Query: 9   NFARYGNPTPKRTKILPYIWNPSREPNPTALVIDSRITTAPMWNEQSVKLWNETYRK 179
           NFA+ G+PTP+   +    W+   E  P  + I ++      ++E+S+  WN  Y K
Sbjct: 494 NFAKTGHPTPE--PVAGITWSQYNETYPAYMNITAQPRIEYNFHEKSMAFWNSYYPK 548


>SB_5836| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -2

Query: 213 KNL*NHNFFSCIFCMFHSIV*RIVRSTSARW*CGNRSPKR*GSAPGWGSICK 58
           ++L  H  F     M H ++ R        W CG+ +  R   A GWGS+C+
Sbjct: 130 RDLMEHRVFERALMMMHRVLFRARSVLLTLWSCGDIAQLR--IAVGWGSVCR 179


>SB_56402| Best HMM Match : Extensin_2 (HMM E-Value=1.1)
          Length = 352

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
 Frame = +3

Query: 21  YGNPTPKRTKILPYIWNPSR-EPNPTALVIDSRITTAPMWNEQ--SVKLWNETY 173
           YG P      + PY+WNP+   P        +      +WN    +  LWN TY
Sbjct: 137 YGTPRMNPQLMEPYVWNPNLWNPTYETPTYGTPSMEPHVWNPNVWNPNLWNLTY 190


>SB_9981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 780

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +3

Query: 9   NFARYGNPTPKRTKILPYIWNPSREPNPTALVIDSRITTAPMWNEQSVKLWNETYRKYR 185
           NF ++G+PTP+   +    W    +     L + +R   A  +  + V LWN    K R
Sbjct: 562 NFLKFGDPTPQ--PVQGITWERYSQRQGDYLKVQARPQIADKYEPRRVALWNYYIPKIR 618


>SB_3431| Best HMM Match : EGF (HMM E-Value=1.8e-08)
          Length = 480

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +1

Query: 19  VTGTQHRNELKFCLTYGTPAGSRTL--PLW*SIPASPPRRCGTNNPS 153
           V   +  N +K C  +  PAGS T+      SIP  PP  C T N S
Sbjct: 139 VQAERPENTVKHC--FAAPAGSSTILRAQMVSIPTQPPSNCYTVNAS 183


>SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 1277

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 128  RGGDAGIDHQSGRVRLPAGVPYVRQNFS 45
            +G ++GI     R+R P G+PY+ ++ S
Sbjct: 1160 QGSESGIQSLESRIRKPLGLPYMGRDLS 1187


>SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 857

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 120 TTAPMWNEQSVKLWNET 170
           T++  WNE S K WNET
Sbjct: 607 TSSKAWNENSSKAWNET 623


>SB_28537| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 621

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
 Frame = +3

Query: 9   NFARYGNPTPKRTKILPYIWNPSREPNPTALVIDSR---ITTAPMWNEQSVKLWNETYRK 179
           NFA+YGNPTP    +   +WN     +   L I      ++    ++      WN  Y K
Sbjct: 523 NFAKYGNPTP-FGPVYGSLWNEFNRSDQVYLSIGGPKGVLSMGKNYHGSRTAFWNYFYPK 581


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,771,671
Number of Sequences: 59808
Number of extensions: 368296
Number of successful extensions: 838
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)