Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0536
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97549-7|AAB52848.3|  565|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AL021492-14|CAA16388.2|  473|Caenorhabditis elegans Hypothetical...    28   6.9  
U40942-4|AAC47069.2|  486|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U40942-3|AAU05564.1|  487|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>U97549-7|AAB52848.3|  565|Caenorhabditis elegans Hypothetical
           protein F15A8.6 protein.
          Length = 565

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = +3

Query: 9   NFARYGNPTP--KRTKILPYIWNPSREPNPT--ALVIDSRITTAPMWNEQSVKLWNE 167
           NFA+YGNP    + + +  + W P+ +  PT    + + +     ++ +   + W +
Sbjct: 501 NFAKYGNPNGQYEDSTVFDFKWEPTSKEEPTNFLAINEKKCEMQTVYQDNRAEFWKK 557


>AL021492-14|CAA16388.2|  473|Caenorhabditis elegans Hypothetical
           protein Y45F10D.13a protein.
          Length = 473

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 139 TNNPSNYGMKHTENTGKEIMVSKIFVPLDNSKKINVRSK 255
           T  PSNYGMK  E   ++++     + +D  +K+N   K
Sbjct: 358 TQQPSNYGMKKIEYEREKVVEEVPPMHMDQYRKLNDEPK 396


>U40942-4|AAC47069.2|  486|Caenorhabditis elegans Hypothetical
           protein K02E10.4a protein.
          Length = 486

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 104 HQSGRVRLPAGVPYVRQNFSSFRCWVPVTSKITC 3
           H   RV LP+  PY   N S+    +P T+ ++C
Sbjct: 45  HFPDRVPLPSTTPYYHSNPSTTFFMIPTTTFVSC 78


>U40942-3|AAU05564.1|  487|Caenorhabditis elegans Hypothetical
           protein K02E10.4b protein.
          Length = 487

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 104 HQSGRVRLPAGVPYVRQNFSSFRCWVPVTSKITC 3
           H   RV LP+  PY   N S+    +P T+ ++C
Sbjct: 45  HFPDRVPLPSTTPYYHSNPSTTFFMIPTTTFVSC 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,294,615
Number of Sequences: 27780
Number of extensions: 284556
Number of successful extensions: 781
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)