Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0536
         (673 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   1.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.0  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   3.5  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   6.1  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   8.1  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 71  PQPGAEPYRFGDRFPHHHRADVERTIRQTME*NIQK 178
           P PGA+   FG   P +   DV  T  + +   I+K
Sbjct: 479 PLPGADDDLFGPASPAYVHEDVSPTFEKPLVREIEK 514


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 549 SDSQITDLFTKRHEYESHLL*TSSNSKCSFSRANNES 659
           SDS++ DL TK   ++  L  +++ S CS + A  ++
Sbjct: 492 SDSRLLDLCTKFLMHKDSLGLSTATSTCSLAVAKQQN 528


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 33  TPKRTKILPYIWNPSREPNPTAL 101
           T  R K+LPY W   ++   T L
Sbjct: 288 TTSRKKVLPYYWYKYQDRRDTDL 310


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 109 IPASPPRRCGTNNPS 153
           +PA PPR  G N P+
Sbjct: 13  LPAGPPRLLGWNVPA 27


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 25  GTQHRNELKFCLTYGTPAG 81
           GT     + FC+T+G  AG
Sbjct: 237 GTNVMGMIVFCITFGLVAG 255


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,226
Number of Sequences: 438
Number of extensions: 3791
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)