Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0536
         (673 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g47930.1 68415.m05993 hydroxyproline-rich glycoprotein family...    27   8.6  
At1g73960.1 68414.m08565 expressed protein similar to TATA bindi...    27   8.6  

>At2g47930.1 68415.m05993 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 136

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 27  NPTPKRTKILPYIWNPSREPNPTALVIDSRITTAPM 134
           +P+P  + I+P I +    PNP A+  D  +  +P+
Sbjct: 66  SPSPSESSIMPTIPSSLSPPNPDAVTPDPLLEVSPV 101


>At1g73960.1 68414.m08565 expressed protein similar to TATA binding
           protein associated factor (GI:2827282) [Homo sapiens];
           similar to Transcription initiation factor TFIID 150 kDa
           subunit (TAFII-150) (TAFII150) (Swiss-Prot:Q24325)
           [Drosophila melanogaster]
          Length = 1390

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +1

Query: 160 GMKHTENTGKEIMVSKIFVPLDNSKK 237
           G K +ENTG +++  K+F+ +D  K+
Sbjct: 14  GAKTSENTGAKVLHQKLFLSIDFKKR 39


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,105,806
Number of Sequences: 28952
Number of extensions: 254216
Number of successful extensions: 585
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)