Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0534
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 268 4e-73
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 229 2e-61
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 134 1e-32
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 133 2e-32
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 130 2e-31
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 126 4e-30
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 124 1e-29
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 112 4e-26
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 99 5e-22
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 96 4e-21
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 75 7e-15
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 75 7e-15
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 74 2e-14
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 72 8e-14
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 71 2e-13
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 69 8e-13
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 68 1e-12
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 67 2e-12
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 37 0.003
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 37 0.003
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 34 0.020
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 33 0.035
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 33 0.047
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 31 0.19
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 30 0.25
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 30 0.25
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 29 0.44
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 28 1.0
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 28 1.0
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 27 1.8
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 27 2.3
SPAC4H3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 3.1
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c... 26 5.4
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 25 7.1
SPAC926.05c |||diphthamide biosynthesis protein Dph4 |Schizosacc... 25 9.4
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 25 9.4
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 25 9.4
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 25 9.4
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 9.4
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo... 25 9.4
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 268 bits (658), Expect = 4e-73
Identities = 123/191 (64%), Positives = 157/191 (82%), Gaps = 2/191 (1%)
Frame = +1
Query: 64 KSSWLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDT 243
K LKVIILG+SGVGKTS+MNQ+VN+KFS YKATIGADFLTKEV+VDD++VT+Q+WDT
Sbjct: 5 KKHLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDT 64
Query: 244 AGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVILG 423
AGQERFQSLGVAFYRGADCCVLV+DV +F++L+SWRDEFLIQASP +P+ FPF++LG
Sbjct: 65 AGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILLG 124
Query: 424 NKVDLD--NRAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAFQTIARNALAQETEAEL 597
NKVD++ R VS + +CQ++ +IPYFETSAKEA+NV+ AF+T+A+ AL ++
Sbjct: 125 NKVDVEEQKRMVSKSKALAFCQARGEIPYFETSAKEAINVQEAFETVAKLALENMDSDDI 184
Query: 598 YNEFPDQIKLN 630
+F D I L+
Sbjct: 185 AADFTDPIHLD 195
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 229 bits (561), Expect = 2e-61
Identities = 112/194 (57%), Positives = 150/194 (77%), Gaps = 5/194 (2%)
Frame = +1
Query: 64 KSSWLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDT 243
K +LKV+ILGDSGVGKT LMNQFVN+KFS +YKATIGADFLTK+V+VDD++VT+Q+WDT
Sbjct: 5 KRVFLKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDT 64
Query: 244 AGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVILG 423
AGQERFQSLG+AFYRGADCCV+V++V +F S+E+WR EFL Q S +D FPF+I+G
Sbjct: 65 AGQERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTS-QDECAFPFIIVG 123
Query: 424 NKVDLD--NRAVSVKRGQQWCQSK--NDIPYFETSAKEAVNVELAFQTIARNALAQETEA 591
N++D D RAVS+ R +C+SK +++ +FE SAKE NV F+T++R AL E+
Sbjct: 124 NQIDKDASKRAVSLHRALDYCKSKHGSNMIHFEASAKENTNVTDLFETVSRLALENESSR 183
Query: 592 -ELYNEFPDQIKLN 630
+ N+F + + L+
Sbjct: 184 DDFVNDFSEPLLLS 197
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 134 bits (323), Expect = 1e-32
Identities = 64/161 (39%), Positives = 109/161 (67%), Gaps = 1/161 (0%)
Frame = +1
Query: 79 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQER 258
K +++GDSGVGK++L+ +F +F+ + K+TIG +F T+ +++D++ + QIWDTAGQER
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQER 71
Query: 259 FQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVILGNKVDL 438
++++ A+YRGA ++V+D+T ++F ++ W E A N +++GNK DL
Sbjct: 72 YRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHAD----SNIVIMLVGNKTDL 127
Query: 439 DN-RAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAFQTI 558
+ RAVS + Q + ++N++ + ETSA +A NVE AFQT+
Sbjct: 128 LHLRAVSTEEAQAFA-AENNLSFIETSAMDASNVEEAFQTV 167
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 133 bits (321), Expect = 2e-32
Identities = 71/189 (37%), Positives = 114/189 (60%), Gaps = 1/189 (0%)
Frame = +1
Query: 79 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQER 258
K++ LG+ VGKTSL+ +F+ +F N Y+ATIG DFL+K + ++DR V +Q+WDTAGQER
Sbjct: 13 KLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 72
Query: 259 FQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVILGNKVDL 438
F+SL ++ R + ++V+D+T N+F + E W ++ + D+ V++GNK DL
Sbjct: 73 FRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERG----DDVIIVLVGNKTDL 128
Query: 439 -DNRAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAFQTIARNALAQETEAELYNEFPD 615
D R V+ + G++ + I + ETSAK NV+L F+ IA+ E + D
Sbjct: 129 ADKRQVTQEEGEKKAKELK-IMHMETSAKAGHNVKLLFRKIAQMLPGMENVETQSTQMID 187
Query: 616 QIKLNANDN 642
+ + N+N
Sbjct: 188 -VSIQPNEN 195
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 130 bits (313), Expect = 2e-31
Identities = 71/182 (39%), Positives = 111/182 (60%), Gaps = 1/182 (0%)
Frame = +1
Query: 76 LKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQE 255
+K++++GDSGVGK+ L+ +F F+ + TIG DF + + +D + + +QIWDTAGQE
Sbjct: 10 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 69
Query: 256 RFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVILGNKVD 435
RF+++ A+YRGA +L++DVT +F ++ +W AS +N +++GNK D
Sbjct: 70 RFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHAS----ENVYKILIGNKCD 125
Query: 436 L-DNRAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAFQTIARNALAQETEAELYNEFP 612
D R VS ++GQ + + E SAK VNV+ AF T+AR Q+ +AE NEF
Sbjct: 126 CEDQRQVSFEQGQALADELG-VKFLEASAKTNVNVDEAFFTLAREIKKQKIDAE--NEFS 182
Query: 613 DQ 618
+Q
Sbjct: 183 NQ 184
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 126 bits (303), Expect = 4e-30
Identities = 67/165 (40%), Positives = 103/165 (62%), Gaps = 3/165 (1%)
Frame = +1
Query: 79 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRI-VTMQIWDTAGQE 255
K+++LGDS VGK+SL+ +FV +F + ++TIGA FLT+ + +D+ V ++IWDTAGQE
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQE 75
Query: 256 RFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVILGNKVD 435
R++SL +YR A+C ++V+D+T + + +SW E QA P+ + GNK+D
Sbjct: 76 RYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQA----PEGIVIALAGNKLD 131
Query: 436 L--DNRAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAFQTIAR 564
L + RAV + + N + +FETSAK A NV F IA+
Sbjct: 132 LAQERRAVEKADAEAYAAEAN-LLFFETSAKTAENVNELFTAIAK 175
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 124 bits (299), Expect = 1e-29
Identities = 62/163 (38%), Positives = 105/163 (64%), Gaps = 1/163 (0%)
Frame = +1
Query: 79 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQER 258
K++++GDSGVGK+ L+ +F + ++ Y +TIG DF + ++ + V +QIWDTAGQER
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQER 69
Query: 259 FQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVILGNKVDL 438
F+++ ++YRGA ++V+DVT ++F +++ W E A + +++GNK D+
Sbjct: 70 FRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYA----VEGVNRLLVGNKSDM 125
Query: 439 -DNRAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAFQTIAR 564
D + V +++ S N IP+ ETSAK++ NVE AF T++R
Sbjct: 126 VDKKVVEYSVAKEFADSLN-IPFLETSAKDSTNVEQAFLTMSR 167
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 112 bits (270), Expect = 4e-26
Identities = 60/173 (34%), Positives = 97/173 (56%), Gaps = 5/173 (2%)
Frame = +1
Query: 76 LKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIV----DDRIVTMQIWDT 243
+K+++ G SG GK+ L+ +FV ++ +Q T+G DF ++ + V + + +QIWDT
Sbjct: 10 VKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDT 69
Query: 244 AGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVILG 423
AGQE+F+S+ +YRGA VLV+DVT ++F+ L SW + A P V+ G
Sbjct: 70 AGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMA----PSTICVVLAG 125
Query: 424 NKVDLDN-RAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAFQTIARNALAQ 579
+K DL N R VS + ++C K+ ETS+ NVE F ++ + +
Sbjct: 126 SKSDLQNQRQVSTEEAAEFCSEKHISSAHETSSYTGSNVEECFLSVVSTIITR 178
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 99.1 bits (236), Expect = 5e-22
Identities = 55/163 (33%), Positives = 95/163 (58%), Gaps = 1/163 (0%)
Frame = +1
Query: 79 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQER 258
K++++GD GVGK++L Q + F ++Y TI D K+ +D + + DTAGQE
Sbjct: 10 KLVVVGDGGVGKSALTIQLIQSHFVDEYDPTI-EDSYRKKCEIDGEGALLDVLDTAGQEE 68
Query: 259 FQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVILGNKVDL 438
+ ++ + R + +LV+++T+ ++F + ++ + L +D D FP V++ NK DL
Sbjct: 69 YSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQIL---RVKDKDTFPVVLVANKCDL 125
Query: 439 D-NRAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAFQTIAR 564
+ R VS G+Q +S + + Y ETSAK +NVE AF ++ R
Sbjct: 126 EAERVVSRAEGEQLAKSMHCL-YVETSAKLRLNVEEAFYSLVR 167
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 95.9 bits (228), Expect = 4e-21
Identities = 51/162 (31%), Positives = 85/162 (52%)
Frame = +1
Query: 79 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQER 258
K++++GD G GKT+ + + + +F +Y AT+G + + + +WDTAGQE+
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEK 70
Query: 259 FQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVILGNKVDL 438
L +Y C +++FDVT+ T+K++ W + + R +N P V+ GNKVD+
Sbjct: 71 LGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLV-----RVCENIPIVLCGNKVDV 125
Query: 439 DNRAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAFQTIAR 564
R V K K ++ Y++ SAK N E F +AR
Sbjct: 126 KERKVKAK--AITFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 75.4 bits (177), Expect = 7e-15
Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 14/179 (7%)
Frame = +1
Query: 79 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQER 258
K++I+GD GKT L+ F F Y T+ +++ +V VD R + + +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVA-DVEVDGRHIELALWDTAGQED 66
Query: 259 FQSLGVAFYRGADCCVLVFDVTAPNTFKSL-ESWRDEFLIQASPRDPDNFPFVILGNKVD 435
+ L Y + ++ F V AP + ++ E W E L S N P +++G KVD
Sbjct: 67 YDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFCS-----NLPILLVGCKVD 121
Query: 436 LDN-------------RAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAFQTIARNAL 573
L N + ++ + GQ Q Y E SAK V F+T AR ++
Sbjct: 122 LRNDPKTIEELSKTSQKPITFEEGQVVAQKIGAYKYLECSAKLNEGVNEVFETAARASM 180
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 75.4 bits (177), Expect = 7e-15
Identities = 55/182 (30%), Positives = 86/182 (47%), Gaps = 9/182 (4%)
Frame = +1
Query: 64 KSSWLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDT 243
K + K++ILGD GKTSL+N F F Y+ TI +++ ++ VD + + +WDT
Sbjct: 10 KPIYRKIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYI-HDIFVDGNSIELSLWDT 68
Query: 244 AGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVILG 423
AGQE + L Y ++ F V + + SLE+ ++L + S P V++
Sbjct: 69 AGQEEYDQLRSLSYSDTHVIMICFAVDSRD---SLENVITKWLPEVSSNCP-GVKLVLVA 124
Query: 424 NKVDL---------DNRAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAFQTIARNALA 576
K DL ++ + + G + N + Y E SAK V AF AR ALA
Sbjct: 125 LKCDLRGADEEQVDHSKIIDYEEGLAAAKKINAVRYLECSAKLNRGVNEAFTEAARVALA 184
Query: 577 QE 582
+
Sbjct: 185 AQ 186
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 73.7 bits (173), Expect = 2e-14
Identities = 54/172 (31%), Positives = 83/172 (48%), Gaps = 14/172 (8%)
Frame = +1
Query: 79 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVI-VDDRIVTMQIWDTAGQE 255
K++++GD G GKT L+ F + F +Y T+ +++T + +++ + +WDTAGQE
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQE 75
Query: 256 RFQSLGVAFYRGADCCVLVFDVTAPNTFKSL-ESWRDEFLIQASPRDPDNFPFVILGNKV 432
+ L Y ++ +L F + P + ++ E W E + PR P V++G K
Sbjct: 76 EYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPE-VQHFCPRT----PIVLVGLKA 130
Query: 433 DL--DNRAVSVKRGQ-------QWCQS---KNDIPYFETSAKEAVNVELAFQ 552
DL D A V R Q Q QS + PY E SAKE V FQ
Sbjct: 131 DLRKDRNATEVLRTQGLTPVTYQQAQSVALSMNAPYVECSAKENTGVNEVFQ 182
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 71.7 bits (168), Expect = 8e-14
Identities = 39/128 (30%), Positives = 75/128 (58%)
Frame = +1
Query: 79 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQER 258
K++++GD GKTSL++ F F +Y T+ ++++ + VD + V + +WDTAGQE
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVS-DCRVDGKSVQLALWDTAGQEE 68
Query: 259 FQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVILGNKVDL 438
++ L Y A ++ F + +P+ SLE+ +++ + + P N PF+++G K DL
Sbjct: 69 YERLRPMSYAKAHIILVGFAIDSPD---SLENVSTKWIEEINTLCP-NVPFILVGMKADL 124
Query: 439 DNRAVSVK 462
+ V+++
Sbjct: 125 RSDPVAIE 132
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 70.5 bits (165), Expect = 2e-13
Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 1/161 (0%)
Frame = +1
Query: 79 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQER 258
++ +LG VGK+SL Q+V F Y TI F +K + + +I DTAGQ+
Sbjct: 8 RIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTF-SKNIKYKGQEFATEIIDTAGQDE 66
Query: 259 FQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVILGNKVDL 438
+ L G VLV+ +T+ ++F+ ++ RD+ L + + P V++GNK DL
Sbjct: 67 YSILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKIL---NHTGTEWVPIVVVGNKSDL 123
Query: 439 D-NRAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAFQTI 558
RAV+ + G+ ++ + E SA+ NV AF+ I
Sbjct: 124 HMQRAVTAEEGKA-LANEWKCAWTEASARHNENVARAFELI 163
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 68.5 bits (160), Expect = 8e-13
Identities = 30/94 (31%), Positives = 52/94 (55%)
Frame = +1
Query: 76 LKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQE 255
+KV ++GDS +GKTSLM +V F + T+G +F+ K + + + +T IWD GQ
Sbjct: 11 IKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQR 70
Query: 256 RFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESW 357
F ++ A + +FD++ +T S++ W
Sbjct: 71 EFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKEW 104
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 67.7 bits (158), Expect = 1e-12
Identities = 42/135 (31%), Positives = 73/135 (54%), Gaps = 2/135 (1%)
Frame = +1
Query: 76 LKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQE 255
+K +++GD VGKT L+ + KF + Y T+ ++ V++ D T+ ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAVT-VMIGDEPYTLGLFDTAGQE 62
Query: 256 RFQSLGVAFYRGADCCVLVFDVTAPNTFKSL-ESWRDEFLIQASPRDPDNFPFVILGNKV 432
+ L Y D ++ F VT+P +F+++ E W E + P P +I+G ++
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPE-VHHHCP----GVPCLIVGTQI 117
Query: 433 DL-DNRAVSVKRGQQ 474
DL D+ +V K +Q
Sbjct: 118 DLRDDPSVQQKLARQ 132
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 67.3 bits (157), Expect = 2e-12
Identities = 51/175 (29%), Positives = 79/175 (45%), Gaps = 10/175 (5%)
Frame = +1
Query: 79 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQER 258
K++I+GD GKT L+ F F Y T+ +++ +V VD R V + +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVA-DVEVDGRHVELALWDTAGQED 66
Query: 259 FQSLGVAFYRGADCCVLVFDVTAPNTFKSL-ESWRDE---------FLIQASPRDPDNFP 408
+ L Y + ++ F V +P++ ++ E W E L+ A D N P
Sbjct: 67 YDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCSSLPILLVACKADLRNDP 126
Query: 409 FVILGNKVDLDNRAVSVKRGQQWCQSKNDIPYFETSAKEAVNVELAFQTIARNAL 573
I+ + V+ + GQ Q Y E SAK V F++ R A+
Sbjct: 127 -KIIEELSKTNQHPVTTEEGQAVAQKIGAYKYLECSAKTNEGVREVFESATRAAM 180
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 36.7 bits (81), Expect = 0.003
Identities = 36/171 (21%), Positives = 69/171 (40%), Gaps = 3/171 (1%)
Frame = +1
Query: 64 KSSWLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDT 243
K ++V++LG GKT+++ +N+ N+ T G T EV + IWD
Sbjct: 13 KEREVRVLLLGLDNAGKTTILKCLLNEDV-NEVSPTFGFQIRTLEV----EGLRFTIWDI 67
Query: 244 AGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVILG 423
GQ+ ++ ++ + + V D + + E L++ ++L
Sbjct: 68 GGQKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTS---ILVLA 124
Query: 424 NKVDLDNRAVSVKRGQQWCQSKNDIPY---FETSAKEAVNVELAFQTIARN 567
NK D+ S + + SK + F SA +N++ A +A +
Sbjct: 125 NKSDVSGALSSEEISKILNISKYKSSHWRIFSVSALTGLNIKDAISWLAND 175
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 36.7 bits (81), Expect = 0.003
Identities = 30/121 (24%), Positives = 51/121 (42%)
Frame = +1
Query: 76 LKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQE 255
+++++LG GKT+++ K NQ TI E + I +WD GQ+
Sbjct: 22 MRILMLGLDAAGKTTILY----KLKLNQSVVTIPTVGFNVETVTYKNI-KFNVWDVGGQD 76
Query: 256 RFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVILGNKVD 435
+ + L ++ G + V D N + R E S R+ + ++L NK D
Sbjct: 77 KIRPLWRHYFTGTKGLIFVVDSADSN---RISEARQELHRIISDREMRDCLLLVLANKQD 133
Query: 436 L 438
L
Sbjct: 134 L 134
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 33.9 bits (74), Expect = 0.020
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 9/113 (7%)
Frame = +1
Query: 79 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGA--DFLTKEVIVDDRIVTMQIWDTAGQ 252
KV+++G SG GK+S M V + + +GA D V +V + +WD GQ
Sbjct: 4 KVLLMGRSGSGKSS-MRSIVFSNYVAKDTRRLGATIDIEHSHVRFLGNLV-LNLWDCGGQ 61
Query: 253 ERFQSLGVA-----FYRGADCCVLVFDVTAPNTFKSLESWRD--EFLIQASPR 390
E F ++ +R + VFDV + + L ++R+ E + SP+
Sbjct: 62 EAFMENYLSAQRDHIFRNVQVLIYVFDVESREFERDLVTFRNCLEATVANSPQ 114
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 33.1 bits (72), Expect = 0.035
Identities = 23/67 (34%), Positives = 31/67 (46%)
Frame = +1
Query: 49 KCLHGKSSWLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTM 228
KC + V ILG S GK+SL+N N++ S G EV+VD +
Sbjct: 231 KCKEVLRKGINVAILGPSNAGKSSLINLLANRRIS-IVSPQSGTTRDAIEVLVDINGFPV 289
Query: 229 QIWDTAG 249
+ DTAG
Sbjct: 290 LLSDTAG 296
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 32.7 bits (71), Expect = 0.047
Identities = 27/130 (20%), Positives = 58/130 (44%)
Frame = +1
Query: 55 LHGKSSWLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQI 234
L GK ++++++G GKT+++ + + TIG + T V+ R ++ +
Sbjct: 12 LFGKRE-MRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYRNISFTV 65
Query: 235 WDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFV 414
WD GQ++ + L +++ + V D N + + +E + + + +
Sbjct: 66 WDVGGQDKIRPLWRHYFQNTQGIIFVVD---SNDRERISEAHEELQRMLNEDELRDALLL 122
Query: 415 ILGNKVDLDN 444
+ NK DL N
Sbjct: 123 VFANKQDLPN 132
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 30.7 bits (66), Expect = 0.19
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = +1
Query: 76 LKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLT-KEVIVD-DRIVTMQIWDTAG 249
+ +I++G+S +GKT+ +N F+ +N ++ DF+ K + D D+ + I DT G
Sbjct: 119 INLIVVGESSLGKTTFVNSFLQSNDTN-FRPKKTMDFVEHKATLSDGDQKFNLTIVDTPG 177
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 30.3 bits (65), Expect = 0.25
Identities = 27/119 (22%), Positives = 55/119 (46%)
Frame = +1
Query: 79 KVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIWDTAGQER 258
K++ LG GKT+L++ N + + + T+ ++E+ + + V +D G ++
Sbjct: 22 KMLFLGLDNAGKTTLLHMLKNDRLAVM-QPTLHPT--SEELAIGN--VRFTTFDLGGHQQ 76
Query: 259 FQSLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVILGNKVD 435
+ L ++ + V + D F+ L + E + + PF+ILGNK+D
Sbjct: 77 ARRLWRDYFPEVNGIVYLVDCC---DFERLSESKAELDALLAMEELARVPFLILGNKID 132
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 30.3 bits (65), Expect = 0.25
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +1
Query: 82 VIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADF 186
V++LG+SG GK++L+N +N+ + ++ DF
Sbjct: 98 VLVLGESGSGKSTLVNTLLNRDVYPPTQKSLTGDF 132
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 29.5 bits (63), Expect = 0.44
Identities = 15/67 (22%), Positives = 35/67 (52%)
Frame = +1
Query: 58 HGKSSWLKVIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDRIVTMQIW 237
HG+ W +++ G G GK+ L + S + + +D ++K + +R+V Q++
Sbjct: 157 HGRKPWSGILLYGPPGTGKSYLAKAVATEAGSTFFSIS-SSDLVSKWMGESERLV-RQLF 214
Query: 238 DTAGQER 258
+ A +++
Sbjct: 215 EMAREQK 221
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 28.3 bits (60), Expect = 1.0
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +1
Query: 76 LKVIILGDSGVGKTSLMNQFVNK 144
++V+I GD GVGK+SL++ + +
Sbjct: 4 VRVVICGDQGVGKSSLISALIQE 26
Score = 27.5 bits (58), Expect = 1.8
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 1/121 (0%)
Frame = +1
Query: 88 ILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVIVDDR-IVTMQIWDTAGQERFQ 264
++G GKT+L++ F+N +N + T + E R +V +I +T +
Sbjct: 426 VVGSKSCGKTALLSSFIN---NNTNRLTPNTVVNSVEFQSTQRYLVLSEIGETDLDILAE 482
Query: 265 SLGVAFYRGADCCVLVFDVTAPNTFKSLESWRDEFLIQASPRDPDNFPFVILGNKVDLDN 444
+ D L++D + PN+F + + L+ P D P V K DLD
Sbjct: 483 PKSL---EACDILCLLYDSSNPNSFSFIAN-----LLNLYP-DLQKIPCVFAATKADLDR 533
Query: 445 R 447
+
Sbjct: 534 Q 534
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 223 TMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPN 333
T +IWD +++ +L V + G D VL ++ PN
Sbjct: 315 TFRIWDVRNKQKTSALTVNAHPGVDVNVLSWNTRVPN 351
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = -2
Query: 338 NVLGAVTSKTNTQQSAPR*KATPSDWNRSWPAVSHICIVTILSSTITSFVRK 183
N L + S TNT + + T S+WN +SH + +L + IT F +K
Sbjct: 129 NQLSVIRSSTNTVKGRKKNPTTNSNWN----GISH--VNALLDAIITLFQKK 174
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 565 NALAQETEAELYNEFPDQIKLNANDN 642
N L ++ + EF DQ+KLNAN N
Sbjct: 349 NVLKMASKIPKFVEFHDQVKLNANMN 374
>SPAC4H3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 131
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 550 QTIARNALAQETEAELYNEFPDQIKLN 630
+T+ + AQET A+LY E D + N
Sbjct: 3 ETVNKILRAQETRAQLYKELEDALNAN 29
>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 25.8 bits (54), Expect = 5.4
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = -2
Query: 233 ICIVTILSSTITSFVRKSAPIVALYWLENFL 141
I +V++++ T+ + + +API YW + F+
Sbjct: 373 IMVVSMIAFTVGTILIATAPIHQTYWAQTFV 403
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 25.4 bits (53), Expect = 7.1
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Frame = +1
Query: 82 VIILGDSGVGKTSLMNQFVNKKFS----NQYKATIGADFLTKEVIVDDRIVTMQIWDTAG 249
V +LG GK++L+N FS ++ + T +L+K + I+ M + T G
Sbjct: 42 VAVLGSQSTGKSTLLNNLFGTSFSVMDASKRQQTTKGIWLSK--ANNSPILVMDVEGTDG 99
Query: 250 QER 258
+ER
Sbjct: 100 RER 102
>SPAC926.05c |||diphthamide biosynthesis protein Dph4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 139
Score = 25.0 bits (52), Expect = 9.4
Identities = 15/56 (26%), Positives = 23/56 (41%)
Frame = +1
Query: 478 CQSKNDIPYFETSAKEAVNVELAFQTIARNALAQETEAELYNEFPDQIKLNANDNG 645
C+ K + Y KEA V + + + + QE E+ Y D + DNG
Sbjct: 36 CKEKPSVVYTIDQVKEAYQVLSSEKDRQQYQIKQEEESSHYYSIVDLSEFEELDNG 91
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 25.0 bits (52), Expect = 9.4
Identities = 7/21 (33%), Positives = 18/21 (85%)
Frame = +1
Query: 82 VIILGDSGVGKTSLMNQFVNK 144
++++G++G GK++ + QF+N+
Sbjct: 115 IVVVGETGSGKSTQIPQFLNE 135
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/41 (21%), Positives = 22/41 (53%)
Frame = +1
Query: 82 VIILGDSGVGKTSLMNQFVNKKFSNQYKATIGADFLTKEVI 204
+++ G+SG GKT + + + T+G+ + +++I
Sbjct: 166 ILVTGESGAGKTENTKRIIQYLAAIASSTTVGSSQVEEQII 206
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 55 LHGKSSWLKVIILGDSGVGKTSLMNQFVNKKFSN 156
LH + V ++G GK+S++N KK N
Sbjct: 304 LHSDKKQISVGLIGFPNAGKSSIINTLRKKKVCN 337
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 25.0 bits (52), Expect = 9.4
Identities = 22/106 (20%), Positives = 38/106 (35%), Gaps = 5/106 (4%)
Frame = +1
Query: 157 QYKATIGADFLTKEVIVDDRIVTMQIWDTAGQERFQSLGVA-----FYRGADCCVLVFDV 321
Q I F V D+IV +++W + A FYR + +V
Sbjct: 752 QQSVKITEPFKRSSSNVHDKIVFLEVWKSIMAALIYVFSTATEDTVFYRVVNGIQQATEV 811
Query: 322 TAPNTFKSLESWRDEFLIQASPRDPDNFPFVILGNKVDLDNRAVSV 459
A + E Q + DP + P L + +++R ++V
Sbjct: 812 AAAYELNEPVDYAIERFCQFTALDPSSVPGTQLNTAIKVEDRIITV 857
>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 566
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 61 GKSSWLKVIILGDSGVGKTSLMNQFVNKKF 150
G SS+ KV +LG VG+ L+ + + KF
Sbjct: 191 GPSSFEKVFLLGKGDVGRVYLVREKKSGKF 220
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,829,796
Number of Sequences: 5004
Number of extensions: 60257
Number of successful extensions: 266
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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