Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0533
         (662 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   3.4  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   4.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.5  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   6.0  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 150 SLSAYKFRTTYGGSVCGVTTALGRKS 227
           +L + K+R  +  ++C  T  +GR+S
Sbjct: 329 NLMSIKYRNAFKQTICCKTRIIGRRS 354


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 442 NNAISSREKQLTVSKILSKDINIFCAQQN 356
           +NA+        V K L ++IN FC + N
Sbjct: 314 SNALYELALNQDVQKKLREEINTFCPKNN 342


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 433 ISSREKQLTVSKILSKDINIFC 368
           I S +KQLT+++I +   N FC
Sbjct: 518 IESPDKQLTLNEIYNWFQNTFC 539


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -3

Query: 381 SIYF-VHSKMQIQKQQEKDMRER 316
           SIY   HSK + Q+++ + MRER
Sbjct: 53  SIYHRQHSKNEQQRKEMEQMRER 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,620
Number of Sequences: 438
Number of extensions: 3097
Number of successful extensions: 19
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)