Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0531
(662 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 28 1.4
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar... 28 1.4
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 27 2.4
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 27 2.4
SPAC4H3.13 |||transcription factor Pcc1 |Schizosaccharomyces pom... 27 2.4
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 27 2.4
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 26 5.6
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 25 7.4
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po... 25 7.4
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 25 7.4
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces... 25 9.7
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 25 9.7
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar... 25 9.7
>SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 100
Score = 27.9 bits (59), Expect = 1.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 289 NCTSALFPPQSPPTSLFKDIFYIPDYL 209
+C+ + + PP LF F+IPD+L
Sbjct: 10 SCSHRVIQAKHPPFPLFHSYFHIPDFL 36
>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 559
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 337 SDRCCKLPVSRRTMLENCTSALFPPQSPPTSLFKDIF 227
++RCC LP R +++ S PPQS P+S + F
Sbjct: 386 AERCCHLPGKRIFTIDSSYSE-EPPQSSPSSTLQYTF 421
>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 720
Score = 27.1 bits (57), Expect = 2.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -2
Query: 331 RCCKLPVSRRTMLENCT 281
RC ++P S+RT+ NCT
Sbjct: 408 RCTEIPESKRTVFPNCT 424
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 27.1 bits (57), Expect = 2.4
Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Frame = +3
Query: 273 NALVQFSNIVRRDTGSLQHRSESDRYVQEFLSQNQNIPQSFNMNALLG-NLPQHNTTVTN 449
N V +N + G L S R N ++ + NA LP T +TN
Sbjct: 842 NGGVTGANSMSSTLGGLSSMSGMGRAAPGMFMGNVGSFENLSANAASPYGLPPQQTPLTN 901
Query: 450 CIQSPSTSLQSNLN 491
+TS QSN N
Sbjct: 902 AATQQTTSFQSNAN 915
>SPAC4H3.13 |||transcription factor Pcc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 88
Score = 27.1 bits (57), Expect = 2.4
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = -2
Query: 322 KLPVSRRTMLENCTSALFPPQSPPTSLF-KDIFYIPDYLFTMNDLSHVRSIRTKVNA 155
K+P++ R E C L P + L +++F +YL S R R VN+
Sbjct: 14 KVPLASRVDAERCLQVLAPDRELKEELVQRNLFVDDNYLVVNYSCSSARMTRVTVNS 70
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Frame = -3
Query: 342 RTPIGAANCLYL---DALCWKIVQVHCFHHNHHQQVCLKTFFIYLIIYLQ*MTCHT 184
RTP+G N ++ D + W + H F Q + + F ++ + M H+
Sbjct: 359 RTPLGELNWIFTAITDTIAWNVFPKHLFRRLFRQDLMVAALFRNFLLAERIMLVHS 414
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 25.8 bits (54), Expect = 5.6
Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 6/102 (5%)
Frame = +3
Query: 231 MSLNKLVGGDCGGNNALVQFSNIVRRDTGSLQHRSESDRYVQEFLSQNQNIPQSFNMNAL 410
M++ KL + G V+F + R S ++ +DRY+++ + + F L
Sbjct: 63 MAVRKLNNSELGPRKIRVEFPSNDPRRNQSYEYTERTDRYMEQQNAHESSYNSRFIPPVL 122
Query: 411 --LGNLP--QHNTTVTNCIQSPS--TSLQSNLNCIARPSTSY 518
+LP Q + I S S T+L N+N + P+ ++
Sbjct: 123 HSTSSLPASQGGGMPSPAIYSSSMATNLNKNINSTSVPAYNF 164
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 447 NCIQSPSTSLQSNLNCIARPSTSYMPVPSMPRTIPF 554
N I +P+ + QS ++ P+TS P S+P F
Sbjct: 377 NPIAAPALNYQSQVSQTTIPATSLFPAMSLPPQAQF 412
>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 586
Score = 25.4 bits (53), Expect = 7.4
Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = -3
Query: 654 HHC-QKLSLLHNFALKFLEPLKEI 586
H C + +HNF + +EPL+E+
Sbjct: 307 HTCLASIDFMHNFVIAVIEPLQEL 330
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +3
Query: 300 VRRDTGSLQHRSESDRYVQEFLSQNQNIPQSFNMNALLGNLPQHNTT 440
V +DT L + ++LS P+S ++N+L+GN +++++
Sbjct: 511 VNQDTELLGKIENDNSKSNDYLSVRNTRPRSRSLNSLVGNKSENSSS 557
>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 25.0 bits (52), Expect = 9.7
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +2
Query: 266 WKQCTCTIFQHSASRYRQF-AAPIGVR*ICSRVFIAKSKYTSVF*HECITWQFTSTQHNS 442
W C I QH SR+R+ + + +VF K ++F CI+ + Q +S
Sbjct: 67 WSCCHYKIIQHFRSRFREIHPRHVVEKKKTKKVFFKFLKTCAIFYQTCISELISKFQLDS 126
Query: 443 H 445
+
Sbjct: 127 Y 127
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 449 LYTKSVNFFTIKF-ELYS*TFYILYASTFHAKNY 547
L KS+N + KF ELY FY+L + + NY
Sbjct: 802 LSMKSLNNSSRKFLELYQCFFYVLQTNEMYLANY 835
>SPCC1223.02 |nmt1|thi3|no message in thiamine
Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 346
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = +3
Query: 303 RRDTGSLQHRSESDRYVQEFLSQNQNIPQSF----NMNALLGNLPQ 428
+R+ GS HR + +R F N+P+ + N + LG +PQ
Sbjct: 245 KREMGSELHREQFERCFAYFSHDISNVPRDWNKVTNYSKRLGIIPQ 290
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,646,453
Number of Sequences: 5004
Number of extensions: 57150
Number of successful extensions: 147
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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