Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0531
         (662 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0325 - 2208480-2208674,2208772-2210609,2210980-2211109,221...    31   0.82 
02_05_0577 - 30100084-30100251,30100474-30100548,30100631-301007...    29   3.3  
04_01_0329 - 4362493-4362602,4364582-4364651,4364885-4365182,436...    29   4.4  
03_01_0415 + 3191392-3191952                                           29   4.4  
10_01_0099 - 1202668-1203023,1203097-1206037                           28   7.6  
06_03_0558 - 22139878-22139895,22141073-22142404,22143355-221438...    28   7.6  

>02_01_0325 -
           2208480-2208674,2208772-2210609,2210980-2211109,
           2211231-2211270,2211409-2211531,2211940-2212030,
           2212396-2212480,2212565-2212720,2212797-2212853,
           2212940-2213110,2213313-2213330,2213479-2213551,
           2213754-2213839,2214348-2214466,2214542-2214641
          Length = 1093

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 5/121 (4%)
 Frame = +3

Query: 276 ALVQFSNIVRRDTGSLQHRSESDRYVQEFLSQNQNIPQSFNMNALLGNL-PQHNTTVTNC 452
           +LVQ+ N+ R+ + SL + +    Y+Q   +      Q+   + L   L  Q+N    NC
Sbjct: 453 SLVQWMNMNRQQSSSLANTAAQSEYLQ---ALGNPAMQNLAADELARQLYVQNNLLQQNC 509

Query: 453 IQSPSTSLQSNLNCIARPSTSYMPVPSMPRTI-PFMMHQTRIGHSQ---SLSMVPKTLVQ 620
           IQ  S  L   +  +   S + +P+  +   I P    Q  + H +   S+ ++P +  Q
Sbjct: 510 IQFNSPKLPQQMQTMNDLSKAAIPLNQLGAIINPQDQKQDAVNHQRQQNSIQVIPLSQAQ 569

Query: 621 N 623
           +
Sbjct: 570 S 570


>02_05_0577 -
           30100084-30100251,30100474-30100548,30100631-30100755,
           30101538-30101609,30102016-30102108,30102333-30102419,
           30103049-30103135,30103448-30103522,30104142-30104238
          Length = 292

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 396 NMNALLGNLPQHNTTVTNCIQSPSTSLQSNLNCIARPSTSYMPVPS 533
           N N  LG    +   +   IQSP  SLQ+N N +   ++ + P  S
Sbjct: 207 NENERLGGQMSYTNLMQQIIQSPRVSLQANENSMILATSRFSPQES 252


>04_01_0329 -
           4362493-4362602,4364582-4364651,4364885-4365182,
           4365525-4365748
          Length = 233

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = +3

Query: 504 PSTSYMPVPSMPRTIPFMMHQ--TRIGHSQSLSMVPKTLVQNYGAMTTSDNDV 656
           PS    P PS+P+ +  + HQ  TR  H  SL    K  +      T  D+DV
Sbjct: 128 PSIKPKPYPSVPQNVVIVYHQETTRFLHDVSLE---KEAIDKLETSTLEDSDV 177


>03_01_0415 + 3191392-3191952
          Length = 186

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +3

Query: 423 PQHNTTVTNCIQ-SPSTSLQSNLNCIARPSTSYMPVPSMPRTIPFMMHQTRIGHSQSLSM 599
           P H    +  I  SPSTS  S     A P+ S  P PS      F +HQ R   S SL +
Sbjct: 76  PHHGKKRSRAISISPSTSPPSRPELWAGPAFSNSPPPSSLPIPKFSLHQKR---SVSLEL 132

Query: 600 VP 605
            P
Sbjct: 133 PP 134


>10_01_0099 - 1202668-1203023,1203097-1206037
          Length = 1098

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
 Frame = +3

Query: 234 SLNKLVGGDCGGN--NALV--QFSNIVRRDTGSLQHRSESDRYVQEFLSQNQNIPQ-SFN 398
           +L KL+  D   N  N  +  +F N+V     SL+    S   + + L   QN+   +F 
Sbjct: 348 NLTKLIALDLSKNQINGSIPQEFGNLVNLQLLSLEENQISGS-IPKSLGNFQNMQNLNFR 406

Query: 399 MNALLGNLPQHNTTVTNCIQ 458
            N L  +LPQ    +TN ++
Sbjct: 407 SNQLSNSLPQEFGNITNMVE 426


>06_03_0558 -
           22139878-22139895,22141073-22142404,22143355-22143804,
           22144247-22144315
          Length = 622

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
 Frame = -3

Query: 339 TPIGAANCLYLDA---LCWKIVQVHCFHHNHHQQVCLKTFFIY 220
           T   +  C Y DA   +C      HC HH HHQQ  L   + Y
Sbjct: 333 TTFSSVECGYCDAAATVCDHHHHHHC-HHRHHQQQLLAIGYSY 374


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,541,635
Number of Sequences: 37544
Number of extensions: 319730
Number of successful extensions: 826
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)