Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0531
(662 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22791| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.48
SB_16484| Best HMM Match : MSG (HMM E-Value=0.24) 29 2.6
SB_23095| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_5767| Best HMM Match : Gal_Lectin (HMM E-Value=7.4e-08) 29 3.4
SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_37413| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_26341| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_3294| Best HMM Match : DUF755 (HMM E-Value=0.22) 28 5.9
SB_50158| Best HMM Match : Toxin_16 (HMM E-Value=2) 28 7.8
SB_25618| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_23039| Best HMM Match : rve (HMM E-Value=2.8e-20) 28 7.8
>SB_22791| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1798
Score = 31.9 bits (69), Expect = 0.48
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 240 NKLVGGDCGGNNALVQFSNIVRRDTGSLQHRSESDRYV-QEFLSQN 374
NKL +C G L++ +D LQ R++ DRYV Q+ S N
Sbjct: 1116 NKLAIAECDGIETLLRLLQRTPKDESELQARAKQDRYVLQDTASDN 1161
>SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)
Length = 661
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 449 LYTKSVNFFTIKFELYS*TFYILYASTFH-AKNYTFY 556
LY + + + LY+ T Y+LYA+T+H + +T+Y
Sbjct: 560 LYATTYALYATTYVLYA-TTYVLYATTYHYMRQHTYY 595
>SB_23095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2722
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +3
Query: 375 QNIPQSFNMN--ALLGNLPQHNTTVTNCIQSPSTSLQSNLNCIARPSTSYMP 524
QN+P+ F + +++ P T IQ P+ S S ++C T+++P
Sbjct: 2411 QNVPRDFEIELPSVIAESPPLGTRRRENIQKPARSDHSGMSCAVSMRTAFVP 2462
>SB_5767| Best HMM Match : Gal_Lectin (HMM E-Value=7.4e-08)
Length = 504
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 393 KTEVYFDFAIKTLEHIYRTPIGAANCLYLDALCWK 289
K EVY D + T ++I + NCL + LC K
Sbjct: 330 KNEVYGDPCVGTYKYIESNDFASVNCLNVQCLCVK 364
>SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 794
Score = 28.7 bits (61), Expect = 4.5
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Frame = +3
Query: 189 DKSFIVNK*SGI*KMSLNKLVGGDCGGNNALVQF-SNIVRRDTGSLQHRSESDRYVQEFL 365
+ SF+V++ S I K + +GG+ +N + Q+ SN+V + L + +Y+ +
Sbjct: 9 ETSFVVDEVSNIIKEGIEGAIGGNAYQHNKVNQWTSNVVEQCLNQLTKLGKPFKYIVTCV 68
Query: 366 SQNQNIPQSFNMNALLGNLPQHNTTVTNC-IQSPSTSLQ 479
+N ++ + NTT +C I+ P SLQ
Sbjct: 69 IMQKNGAGLHTSSSCYWD----NTTDGSCTIKQPDKSLQ 103
>SB_37413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 423 PQHNTTVTNCIQSPSTSLQSNLNCIARPSTSYMPVPSMPRTIP 551
P H T ++ I +P + SN P+T +P P+T+P
Sbjct: 9 PTHRPTTSHNITTPHPTTPSNSTNSTMPTTQSIPSSLPPKTMP 51
>SB_26341| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 329
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +3
Query: 396 NMNALLGNLPQHNTTVTNCIQSPSTSLQSNLNCIARPSTSYMPVPSMPRTI 548
N NALLG Q + +T+C+ S SN A S V S+ R +
Sbjct: 159 NQNALLGEYSQSDGEMTDCVSSDEDKDMSNQEPEADSSVRPEVVSSIARQV 209
>SB_3294| Best HMM Match : DUF755 (HMM E-Value=0.22)
Length = 884
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +3
Query: 387 QSFNMNALLGNLPQHNTTVTNCIQSPSTSLQSNLNCIARPSTSYMPVPSMP 539
+ N ++ G+ N IQS + L+ L C ++ ST+Y+ VP P
Sbjct: 745 EDHNNQSIDGDAVDDNDDDVPSIQSEVSKLEKTLKCTSKGSTAYL-VPDAP 794
>SB_50158| Best HMM Match : Toxin_16 (HMM E-Value=2)
Length = 746
Score = 27.9 bits (59), Expect = 7.8
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Frame = +3
Query: 312 TGSLQHRSESDRYVQEFLSQNQNIPQSFNMNALLGNLPQ--HNTTVTNCIQSPSTSLQSN 485
T + HR+E Y L +++++ N NA L L Q N Q +Q
Sbjct: 3 TQATLHRTEDGYYELPLLLRDEHVTLQNNRNAALSRLNQLKKRFEAANRKQYREDYIQF- 61
Query: 486 LNCIARP--STSYMPVPSMPRTIPFMMHQTRIGH 581
+N I + S + +PS R P +H+T+ G+
Sbjct: 62 MNIIINNGYAESSLSIPSTSRGGPATLHRTKDGY 95
>SB_25618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 671
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = -2
Query: 370 CDKNS*TYLSDSDRCCKLPVSRRTMLENCTSALFPPQSPPTSLFK 236
C NS S C + R E+ +SA P SPPTSL+K
Sbjct: 55 CPDNSVAMEIGSTSCTCVRGFYRKANESISSACTGPPSPPTSLYK 99
>SB_23039| Best HMM Match : rve (HMM E-Value=2.8e-20)
Length = 984
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = -2
Query: 370 CDKNS*TYLSDSDRCCKLPVSRRTMLENCTSALFPPQSPPTSLFK 236
C NS S C + R E+ +SA P SPPTSL+K
Sbjct: 197 CPDNSVAMEIGSTSCTCVRGFYRKANESISSACTGPPSPPTSLYK 241
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,055,989
Number of Sequences: 59808
Number of extensions: 400600
Number of successful extensions: 1256
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1248
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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