Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0531
         (662 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC012089-1|AAH12089.1|  856|Homo sapiens PROM1 protein protein.        34   0.52 
AY449693-1|AAS19709.1|  842|Homo sapiens prominin 1 isoform s7 p...    34   0.52 
AY449692-1|AAS19708.1|  834|Homo sapiens prominin 1 isoform s6 p...    34   0.52 
AY449691-1|AAS19707.1|  833|Homo sapiens prominin 1 isoform s5 p...    34   0.52 
AY449690-1|AAS19706.1|  825|Homo sapiens prominin 1 isoform s4 p...    34   0.52 
AY449689-1|AAS19705.1|  830|Homo sapiens prominin 1 isoform s3 p...    34   0.52 
AF507034-1|AAM33415.1|  856|Homo sapiens AC133-2 antigen protein.      34   0.52 
AF027208-1|AAB92514.1|  865|Homo sapiens AC133 antigen protein.        34   0.52 
CR456437-1|CAG30323.1|  863|Homo sapiens dJ1014D13.2 protein.          31   2.8  
AL833860-1|CAD38718.1|  657|Homo sapiens hypothetical protein pr...    31   2.8  
AL022311-1|CAI18864.1|  863|Homo sapiens protein ( Human DNA seq...    31   2.8  
AJ496196-1|CAD42713.1|  863|Homo sapiens molecule interacting wi...    31   2.8  
AB051455-1|BAB33338.1|  791|Homo sapiens KIAA1668 protein protein.     31   2.8  
AK128348-1|BAC87394.1|  129|Homo sapiens protein ( Homo sapiens ...    31   4.9  

>BC012089-1|AAH12089.1|  856|Homo sapiens PROM1 protein protein.
          Length = 856

 Score = 33.9 bits (74), Expect = 0.52
 Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
 Frame = +3

Query: 396 NMNALLGNLPQHNTTVTNCIQSPSTSLQSNLN---CIARPST 512
           NMN+ L +L Q +T +++ + S  TSL+S+LN   C+  PS+
Sbjct: 263 NMNSTLKSLHQQSTQLSSSLTSVKTSLRSSLNDPLCLVHPSS 304


>AY449693-1|AAS19709.1|  842|Homo sapiens prominin 1 isoform s7
           protein.
          Length = 842

 Score = 33.9 bits (74), Expect = 0.52
 Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
 Frame = +3

Query: 396 NMNALLGNLPQHNTTVTNCIQSPSTSLQSNLN---CIARPST 512
           NMN+ L +L Q +T +++ + S  TSL+S+LN   C+  PS+
Sbjct: 272 NMNSTLKSLHQQSTQLSSSLTSVKTSLRSSLNDPLCLVHPSS 313


>AY449692-1|AAS19708.1|  834|Homo sapiens prominin 1 isoform s6
           protein.
          Length = 834

 Score = 33.9 bits (74), Expect = 0.52
 Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
 Frame = +3

Query: 396 NMNALLGNLPQHNTTVTNCIQSPSTSLQSNLN---CIARPST 512
           NMN+ L +L Q +T +++ + S  TSL+S+LN   C+  PS+
Sbjct: 272 NMNSTLKSLHQQSTQLSSSLTSVKTSLRSSLNDPLCLVHPSS 313


>AY449691-1|AAS19707.1|  833|Homo sapiens prominin 1 isoform s5
           protein.
          Length = 833

 Score = 33.9 bits (74), Expect = 0.52
 Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
 Frame = +3

Query: 396 NMNALLGNLPQHNTTVTNCIQSPSTSLQSNLN---CIARPST 512
           NMN+ L +L Q +T +++ + S  TSL+S+LN   C+  PS+
Sbjct: 263 NMNSTLKSLHQQSTQLSSSLTSVKTSLRSSLNDPLCLVHPSS 304


>AY449690-1|AAS19706.1|  825|Homo sapiens prominin 1 isoform s4
           protein.
          Length = 825

 Score = 33.9 bits (74), Expect = 0.52
 Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
 Frame = +3

Query: 396 NMNALLGNLPQHNTTVTNCIQSPSTSLQSNLN---CIARPST 512
           NMN+ L +L Q +T +++ + S  TSL+S+LN   C+  PS+
Sbjct: 263 NMNSTLKSLHQQSTQLSSSLTSVKTSLRSSLNDPLCLVHPSS 304


>AY449689-1|AAS19705.1|  830|Homo sapiens prominin 1 isoform s3
           protein.
          Length = 830

 Score = 33.9 bits (74), Expect = 0.52
 Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
 Frame = +3

Query: 396 NMNALLGNLPQHNTTVTNCIQSPSTSLQSNLN---CIARPST 512
           NMN+ L +L Q +T +++ + S  TSL+S+LN   C+  PS+
Sbjct: 263 NMNSTLKSLHQQSTQLSSSLTSVKTSLRSSLNDPLCLVHPSS 304


>AF507034-1|AAM33415.1|  856|Homo sapiens AC133-2 antigen protein.
          Length = 856

 Score = 33.9 bits (74), Expect = 0.52
 Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
 Frame = +3

Query: 396 NMNALLGNLPQHNTTVTNCIQSPSTSLQSNLN---CIARPST 512
           NMN+ L +L Q +T +++ + S  TSL+S+LN   C+  PS+
Sbjct: 263 NMNSTLKSLHQQSTQLSSSLTSVKTSLRSSLNDPLCLVHPSS 304


>AF027208-1|AAB92514.1|  865|Homo sapiens AC133 antigen protein.
          Length = 865

 Score = 33.9 bits (74), Expect = 0.52
 Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
 Frame = +3

Query: 396 NMNALLGNLPQHNTTVTNCIQSPSTSLQSNLN---CIARPST 512
           NMN+ L +L Q +T +++ + S  TSL+S+LN   C+  PS+
Sbjct: 272 NMNSTLKSLHQQSTQLSSSLTSVKTSLRSSLNDPLCLVHPSS 313


>CR456437-1|CAG30323.1|  863|Homo sapiens dJ1014D13.2 protein.
          Length = 863

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 504 PSTSYMPVPSMPRTIPFMMHQTRIGHSQSLSMVP 605
           P T   P P  P   P  +H +R+ HS+  S  P
Sbjct: 472 PKTKKRPAPRAPSASPLALHASRLSHSEPPSATP 505


>AL833860-1|CAD38718.1|  657|Homo sapiens hypothetical protein
           protein.
          Length = 657

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 504 PSTSYMPVPSMPRTIPFMMHQTRIGHSQSLSMVP 605
           P T   P P  P   P  +H +R+ HS+  S  P
Sbjct: 266 PKTKKRPAPRAPSASPLALHASRLSHSEPPSATP 299


>AL022311-1|CAI18864.1|  863|Homo sapiens protein ( Human DNA
           sequence from clone RP5-1014D13 on chromosome
           22q13.1-13.2.  ).
          Length = 863

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 504 PSTSYMPVPSMPRTIPFMMHQTRIGHSQSLSMVP 605
           P T   P P  P   P  +H +R+ HS+  S  P
Sbjct: 472 PKTKKRPAPRAPSASPLALHASRLSHSEPPSATP 505


>AJ496196-1|CAD42713.1|  863|Homo sapiens molecule interacting with
           Rab13 protein.
          Length = 863

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 504 PSTSYMPVPSMPRTIPFMMHQTRIGHSQSLSMVP 605
           P T   P P  P   P  +H +R+ HS+  S  P
Sbjct: 472 PKTKKRPAPRAPSASPLALHASRLSHSEPPSATP 505


>AB051455-1|BAB33338.1|  791|Homo sapiens KIAA1668 protein protein.
          Length = 791

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 504 PSTSYMPVPSMPRTIPFMMHQTRIGHSQSLSMVP 605
           P T   P P  P   P  +H +R+ HS+  S  P
Sbjct: 400 PKTKKRPAPRAPSASPLALHASRLSHSEPPSATP 433


>AK128348-1|BAC87394.1|  129|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46490 fis, clone THYMU3027540. ).
          Length = 129

 Score = 30.7 bits (66), Expect = 4.9
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = -3

Query: 384 VYFDFAIKTLEHIYRTPIGAANCLYLDALCWKIVQVHCFHHNHHQQVCLKTFFIYL 217
           +Y       + HIY     A  C+Y+  +C      H + H +H  +C+   +IY+
Sbjct: 62  MYITHIYVCISHIYMYVYHAYMCMYITYMC----VYHTYMHVYHTYMCVYHIYIYM 113


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,286,853
Number of Sequences: 237096
Number of extensions: 1801159
Number of successful extensions: 7759
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7748
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7478817430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)