Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0531
(662 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66494-10|CAF31472.1| 500|Caenorhabditis elegans Hypothetical p... 33 0.14
Z66494-9|CAA91260.1| 502|Caenorhabditis elegans Hypothetical pr... 30 1.7
AF003389-4|AAN63407.1| 598|Caenorhabditis elegans Hypothetical ... 29 2.2
AF003389-3|AAC71136.1| 1003|Caenorhabditis elegans Hypothetical ... 29 2.2
L16621-13|ABD63202.1| 141|Caenorhabditis elegans Hypothetical p... 29 2.9
AY551964-1|AAS65428.1| 795|Caenorhabditis elegans enhancer of p... 29 2.9
AL132904-22|CAC35840.2| 795|Caenorhabditis elegans Hypothetical... 29 2.9
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 28 5.1
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 28 5.1
Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical p... 28 6.8
AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C... 28 6.8
AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A... 28 6.8
AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein. 28 6.8
AF022974-9|AAC48035.3| 566|Caenorhabditis elegans Hypothetical ... 28 6.8
Z83220-1|CAB05700.2| 440|Caenorhabditis elegans Hypothetical pr... 27 9.0
>Z66494-10|CAF31472.1| 500|Caenorhabditis elegans Hypothetical
protein C34C6.6b protein.
Length = 500
Score = 33.5 bits (73), Expect = 0.14
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 10/71 (14%)
Frame = +3
Query: 246 LVGGDCGGNNALVQFSN--------IVRRDTGSLQHRSESDRYVQEFLSQNQN--IPQSF 395
+V G CG NALV +N + + L S ++ EFL Q P SF
Sbjct: 4 VVEGQCGQQNALVGLANTFGTSNQRVAPSNASLLPSSSMGEQMANEFLRQQARTMAPTSF 63
Query: 396 NMNALLGNLPQ 428
+M ++ NLPQ
Sbjct: 64 SMKSMQNNLPQ 74
>Z66494-9|CAA91260.1| 502|Caenorhabditis elegans Hypothetical
protein C34C6.6a protein.
Length = 502
Score = 29.9 bits (64), Expect = 1.7
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 12/73 (16%)
Frame = +3
Query: 246 LVGGDCGGNNALVQFSNIV----RRDTGS------LQHRSESDRYVQEFLSQNQN--IPQ 389
+V G CG NALV +N +R S L S ++ EFL Q P
Sbjct: 4 VVEGQCGQQNALVGLANTFGTSNQRVAPSNAAASLLPSSSMGEQMANEFLRQQARTMAPT 63
Query: 390 SFNMNALLGNLPQ 428
SF+M ++ NLPQ
Sbjct: 64 SFSMKSMQNNLPQ 76
>AF003389-4|AAN63407.1| 598|Caenorhabditis elegans Hypothetical
protein F23H11.4b protein.
Length = 598
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +3
Query: 369 QNQNIPQSFNMNALLGNLPQHNTTVTNCIQSPSTSLQSNLNCIARPSTSYMPVP 530
Q+ IP+ +N L +LP + ++T PSTS S+ NC ++S + P
Sbjct: 97 QHPVIPERIQLNRPLPSLPI-DVSLTPVYSEPSTSSPSSTNCYENHNSSVVENP 149
>AF003389-3|AAC71136.1| 1003|Caenorhabditis elegans Hypothetical
protein F23H11.4a protein.
Length = 1003
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +3
Query: 369 QNQNIPQSFNMNALLGNLPQHNTTVTNCIQSPSTSLQSNLNCIARPSTSYMPVP 530
Q+ IP+ +N L +LP + ++T PSTS S+ NC ++S + P
Sbjct: 97 QHPVIPERIQLNRPLPSLPI-DVSLTPVYSEPSTSSPSSTNCYENHNSSVVENP 149
>L16621-13|ABD63202.1| 141|Caenorhabditis elegans Hypothetical
protein ZK688.12 protein.
Length = 141
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = -2
Query: 256 PPTSLFKDIFYIPDYLFTMNDLSHVRSIRTKVNARSMLTISKYQHRFLLSL 104
P TS+ ++ ++P L ND+ H K + + ++ K +R ++ L
Sbjct: 73 PETSIEIELLHVPGILLPRNDVHHFSVYYIKCDTEAQVSFIKINYRVIIHL 123
>AY551964-1|AAS65428.1| 795|Caenorhabditis elegans enhancer of
polycomb protein.
Length = 795
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Frame = +3
Query: 414 GNLPQHNTT-VTNCIQSPSTSLQSNLNCIARPSTSYMPVPSMPRTIPFMMHQTRI---GH 581
GN+P T V + + + + C+ R + + VP+ P T+P + Q +
Sbjct: 367 GNVPTVTTKPVRESLANGRFAFKRRRGCVYRAALTVYNVPTAPATVPPVQTQAAVASSSS 426
Query: 582 SQSLSMVPKTL 614
S+S MVP +
Sbjct: 427 SKSTDMVPSNM 437
>AL132904-22|CAC35840.2| 795|Caenorhabditis elegans Hypothetical
protein Y111B2A.11 protein.
Length = 795
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Frame = +3
Query: 414 GNLPQHNTT-VTNCIQSPSTSLQSNLNCIARPSTSYMPVPSMPRTIPFMMHQTRI---GH 581
GN+P T V + + + + C+ R + + VP+ P T+P + Q +
Sbjct: 367 GNVPTVTTKPVRESLANGRFAFKRRRGCVYRAALTVYNVPTAPATVPPVQTQAAVASSSS 426
Query: 582 SQSLSMVPKTL 614
S+S MVP +
Sbjct: 427 SKSTDMVPSNM 437
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 334 DRCCKLPVSRRTMLENCTSALFPPQSPP 251
DR C P +R + + C SA P SPP
Sbjct: 507 DRICVCPEGQRAVDQTCVSASEPVTSPP 534
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 334 DRCCKLPVSRRTMLENCTSALFPPQSPP 251
DR C P +R + + C SA P SPP
Sbjct: 604 DRICVCPEGQRAVDQTCVSASEPVTSPP 631
>Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical protein
T14G10.2a protein.
Length = 1470
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 429 HNTTVTNC-IQSPSTSLQSNLNCIAR-PSTSYMPVPSMPRTIPFMMHQTRIGH 581
H+ T C +SP++S S+ + IA +TS PS + P+ HQT GH
Sbjct: 1355 HSPTSPRCRSRSPASSGCSSFSTIASIAATSMAAAPSAFVSNPYQHHQTVRGH 1407
>Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical
protein T14G10.2a protein.
Length = 1470
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 429 HNTTVTNC-IQSPSTSLQSNLNCIAR-PSTSYMPVPSMPRTIPFMMHQTRIGH 581
H+ T C +SP++S S+ + IA +TS PS + P+ HQT GH
Sbjct: 1355 HSPTSPRCRSRSPASSGCSSFSTIASIAATSMAAAPSAFVSNPYQHHQTVRGH 1407
>AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C
protein.
Length = 1347
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 429 HNTTVTNC-IQSPSTSLQSNLNCIAR-PSTSYMPVPSMPRTIPFMMHQTRIGH 581
H+ T C +SP++S S+ + IA +TS PS + P+ HQT GH
Sbjct: 1232 HSPTSPRCRSRSPASSGCSSFSTIASIAATSMAAAPSAFVSNPYQHHQTVRGH 1284
>AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A
protein.
Length = 1470
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 429 HNTTVTNC-IQSPSTSLQSNLNCIAR-PSTSYMPVPSMPRTIPFMMHQTRIGH 581
H+ T C +SP++S S+ + IA +TS PS + P+ HQT GH
Sbjct: 1355 HSPTSPRCRSRSPASSGCSSFSTIASIAATSMAAAPSAFVSNPYQHHQTVRGH 1407
>AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein.
Length = 1470
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 429 HNTTVTNC-IQSPSTSLQSNLNCIAR-PSTSYMPVPSMPRTIPFMMHQTRIGH 581
H+ T C +SP++S S+ + IA +TS PS + P+ HQT GH
Sbjct: 1355 HSPTSPRCRSRSPASSGCSSFSTIASIAATSMAAAPSAFVSNPYQHHQTVRGH 1407
>AF022974-9|AAC48035.3| 566|Caenorhabditis elegans Hypothetical
protein F26G5.1 protein.
Length = 566
Score = 27.9 bits (59), Expect = 6.8
Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
Frame = +3
Query: 321 LQHRSESDRYVQEFLSQNQNIPQSFNMNALLGNLPQHNTTVTNCIQSPSTSLQSNLNCIA 500
+ +S+ + +Q+ + + N P+ N+L ++ H T + S+ N C
Sbjct: 205 ISQKSDPTKSLQD-VPETVNQPEIAFFNSLPQSIIDHYETWATGLFMARQSIPQN-ECQI 262
Query: 501 RPSTSY-MPVPSMPRTIPFMMHQTRIGHSQSLSMVPKTL 614
R TS+ + + M+HQ R+ Q L + KTL
Sbjct: 263 RMQTSFEQMLTDFQSPLQPMVHQERVPQLQQLQIEKKTL 301
>Z83220-1|CAB05700.2| 440|Caenorhabditis elegans Hypothetical
protein C34B7.1 protein.
Length = 440
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 230 FLYT*LFIYNE*LVTRT*YSYKGQCSINA 144
FL F+++E + R+ YSY GQ +NA
Sbjct: 6 FLLNFAFLFSEAIRCRSCYSYNGQACVNA 34
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,555,651
Number of Sequences: 27780
Number of extensions: 321663
Number of successful extensions: 954
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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